BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0201.p
         (198 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313953|ref|YP_003778045.1| phosphoheptose isomerase [Herba...   349   1e-97
gi|300313700|ref|YP_003777792.1| sedoheptulose 7-phosphate isome...   147   6e-37

>gi|300313953|ref|YP_003778045.1| phosphoheptose isomerase
           [Herbaspirillum seropedicae SmR1]
          Length = 198

 Score =  349 bits (895), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 178/198 (89%), Positives = 187/198 (94%)

Query: 1   MTNQRILSHFQESAELKIHAGAVLAQPIEQAIELMFTALSNGNKILACGNGGSAADCQHF 60
           MTN RIL+HFQESA+LK+ A +VLAQPIEQAIELMFTALSNGNKILACGNGGSAAD QHF
Sbjct: 1   MTNPRILAHFQESADLKMKAASVLAQPIEQAIELMFTALSNGNKILACGNGGSAADSQHF 60

Query: 61  AAELVGRFERERLPLPALALTTDTSILTAVGNDYSYLEIFSKQVQAFGQAGDVLLAFSTS 120
           AAELVGRFERERLPLPALALTTDTSILTAVGNDYSY EIFSKQVQAFGQ+GD+LLAFSTS
Sbjct: 61  AAELVGRFERERLPLPALALTTDTSILTAVGNDYSYQEIFSKQVQAFGQSGDILLAFSTS 120

Query: 121 GNSGNVLAAIDIAQERDMRVVALTGKGGGAIGKKLTDADVHICVPHDRTARIQEVHLVTL 180
           GNSGN+LAAI++A ERDMRVVALTGKGGG IGK L DADVHICVPHDRTARIQEVHLVTL
Sbjct: 121 GNSGNILAAIEVAHERDMRVVALTGKGGGKIGKVLNDADVHICVPHDRTARIQEVHLVTL 180

Query: 181 HCICDGIDVALFGGDVHE 198
           HCICDGIDVALFG D HE
Sbjct: 181 HCICDGIDVALFGDDAHE 198


>gi|300313700|ref|YP_003777792.1| sedoheptulose 7-phosphate
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 195

 Score =  147 bits (371), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 74/153 (48%), Positives = 101/153 (66%), Gaps = 3/153 (1%)

Query: 41  NGNKILACGNGGSAADCQHFAAELVGRFERERLPLPALALTTDTSILTAVGNDYSYLEIF 100
           NG +I   GNGGSAAD QH AAE V +  R+R PLPA ALTTD+SILTA+GNDY Y ++F
Sbjct: 45  NGRRIYIAGNGGSAADAQHLAAEFVSKLARDRAPLPAEALTTDSSILTAIGNDYGYEQVF 104

Query: 101 SKQVQAFGQAGDVLLAFSTSGNSGNVLAAIDIAQERDMRVVALTGKGGGAIGKKLTDADV 160
           S+Q+     AGD+ L  +TSG S N+L A++  +   +  +  TG+ GG   + L  AD 
Sbjct: 105 SRQLAGKAVAGDIFLGITTSGRSPNILRALEQCRAMGVPSILFTGRDGGP-ARPL--ADH 161

Query: 161 HICVPHDRTARIQEVHLVTLHCICDGIDVALFG 193
            I VP + T+ IQE+H+V  H +C+ ++ ALFG
Sbjct: 162 AIVVPGEATSTIQELHIVLAHTLCESVEAALFG 194


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 556,342
Number of extensions: 20769
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 2
Length of query: 198
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 118
Effective length of database: 1,241,070
Effective search space: 146446260
Effective search space used: 146446260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)