BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0199.p
         (129 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313952|ref|YP_003778044.1| Holliday junction resolvase-lik...   133   4e-33

>gi|300313952|ref|YP_003778044.1| Holliday junction resolvase-like
           protein [Herbaspirillum seropedicae SmR1]
          Length = 122

 Score =  133 bits (335), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 71/117 (60%), Positives = 93/117 (79%)

Query: 11  AGPRTSKQVSGDAAEDAALAFLRGEGLRQVERNFRCKGGEIDLIMQDGDTLVFVEVRKRS 70
           +G RTS+Q +G+AAE  AL  LR +GL+ +ERN+RC+GGEIDLIM++GDT+VFVEVR R+
Sbjct: 6   SGSRTSRQRTGEAAEQQALTHLRQQGLQLLERNYRCQGGEIDLIMREGDTVVFVEVRARA 65

Query: 71  KDSFGGALASVTHAKQRRLIVAAQIFLQRYRMPPACRFDVIGYDGDRMNWLKNAVEA 127
             S+GGA ASVT AKQRRLI+AAQ +LQ     P CRFDV+  +G ++ WL+NA+EA
Sbjct: 66  GASYGGAAASVTPAKQRRLILAAQRWLQAQAGTPPCRFDVVTLEGQQLQWLRNAIEA 122


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 412,071
Number of extensions: 15338
Number of successful extensions: 29
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 54
Effective length of database: 1,264,745
Effective search space: 68296230
Effective search space used: 68296230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)