BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0198.p
         (326 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313951|ref|YP_003778043.1| glycosylase [Herbaspirillum ser...   397   e-112

>gi|300313951|ref|YP_003778043.1| glycosylase [Herbaspirillum
           seropedicae SmR1]
          Length = 427

 Score =  397 bits (1020), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/324 (59%), Positives = 251/324 (77%), Gaps = 19/324 (5%)

Query: 3   NFVITIIETGDSVQDVLSAYNDAAAKYDIIVGPLARSAVTALAQSNNIVKPTIALAQPDL 62
           N  ++IIETGDS  D+  AY++A+A++DI++GPL+RSAVTA+AQS  + KPTIALAQPD+
Sbjct: 121 NIQLSIIETGDSAADMQRAYDEASARFDILIGPLSRSAVTAVAQSGRVSKPTIALAQPDM 180

Query: 63  PDGAEQRLPRQLLLMGLSIEDEARQVAAWTERVKTPGKIFSVATNVAWQRRAAKAFTQQA 122
               E +LP Q+L +GLSI++EARQVA W E+ K PGKIF+++T VAWQ+RAA++F  +A
Sbjct: 181 AGEGEMQLPAQMLAVGLSIDEEARQVANWVEKEKAPGKIFAISTGVAWQKRAARSFQLRA 240

Query: 123 RQIGLTVDNLELSVPNNALSASGLAQLSQRIQAERPALLFVALDAAQTIQLRSAIGSEIP 182
           RQ+G+ V+ LELS P+NALSA GLAQL++R++ E+PALLF+ALDA+Q +QLRSA+G+E+P
Sbjct: 241 RQLGMQVETLELSTPSNALSAPGLAQLAKRVEQEKPALLFLALDASQAVQLRSAVGTELP 300

Query: 183 LYGTSQLNPLTLATATAALDAAAKAAAANTAPPVNDSRLPELDGVHLVDMPWQLQADHAA 242
           LYGTSQ+NP TL                      ND +LPELDGV L+D+PWQLQAD+ A
Sbjct: 301 LYGTSQINPFTLKRDNP-----------------ND-KLPELDGVRLIDIPWQLQADNVA 342

Query: 243 VAAYPRSVANTDGKPNADLERLYALGIDAFRVASEIAAQRSGFDIDGVTGQINAN-IGAG 301
           VA YPR   N + +PN DL RLYALGIDA+R+A  IA QRSGFD+DGVTG++N N +  G
Sbjct: 343 VARYPRPTINDNERPNPDLARLYALGIDAYRIAYGIAQQRSGFDVDGVTGRLNVNMVSGG 402

Query: 302 ATYFQRKETQAVYQDGIAVPVANQ 325
           ATYFQR+ETQA+YQDG  VP A+Q
Sbjct: 403 ATYFQRQETQAIYQDGWPVPTADQ 426


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.129    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 927,023
Number of extensions: 36102
Number of successful extensions: 158
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 241
Effective length of database: 1,217,395
Effective search space: 293392195
Effective search space used: 293392195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)