BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0194.p
         (207 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313949|ref|YP_003778041.1| lipoprotein [Herbaspirillum ser...   315   1e-87

>gi|300313949|ref|YP_003778041.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 398

 Score =  315 bits (808), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 154/199 (77%), Positives = 168/199 (84%), Gaps = 1/199 (0%)

Query: 9   CSSAPPLNPSPSTSASTPA-ARSANGKPLPALPAAGSGRGGYYKDDGPGDQPPDGLLDTP 67
           C + PP +      A TP  A S+    +PALPAAGSGRGGYYKDDGPGD  PDGLLD  
Sbjct: 35  CGTTPPASRQGGVQAPTPVKAGSSRPSNVPALPAAGSGRGGYYKDDGPGDHIPDGLLDVA 94

Query: 68  DAEPRVEPYSKSALRPYTVFGKTYTPISDNRPFKQRGIGSWYGKKFHGQKTSSGELYDMY 127
           DAEP+VEP SK+A RPY VFGKTY PI+DN+PF QRGIGSWYGKKFHGQKTSSGELYDMY
Sbjct: 95  DAEPQVEPVSKAASRPYAVFGKTYVPITDNQPFVQRGIGSWYGKKFHGQKTSSGELYDMY 154

Query: 128 KMSAAHPTLPIPSYARVTNLKTGAQVIVRINDRGPFHSTRIIDLSYTAALKLGYLSSGSS 187
           KM+AAHPTLPIPSYARVTNLKTG QVIVRINDRGPFHS+RIIDLSYTAALKLGYL SGSS
Sbjct: 155 KMTAAHPTLPIPSYARVTNLKTGKQVIVRINDRGPFHSSRIIDLSYTAALKLGYLGSGSS 214

Query: 188 ELEVERLLPEDIARMAENK 206
           ELEVER+LPE+  RMA+ +
Sbjct: 215 ELEVERILPEEAQRMADAR 233


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.132    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 417,295
Number of extensions: 13436
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,236,335
Effective search space: 155778210
Effective search space used: 155778210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 128 (53.9 bits)