BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0190.p
         (292 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313173|ref|YP_003777265.1| gluconolactonase [Herbaspirillu...   158   4e-40
gi|300310377|ref|YP_003774469.1| gluconolactonase [Herbaspirillu...   117   1e-27

>gi|300313173|ref|YP_003777265.1| gluconolactonase [Herbaspirillum
           seropedicae SmR1]
          Length = 302

 Score =  158 bits (400), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 96/254 (37%), Positives = 138/254 (54%), Gaps = 15/254 (5%)

Query: 13  VAESPFWHATQSAWYWVDIPRKLICR-QTADGDCQQWQLLEMVACIAPDDDGGLIAGMHT 71
           + ESP WHA ++A YW+DIP K + R     G  ++W L E    I     GGL+  + T
Sbjct: 21  LGESPLWHAQEAALYWIDIPGKAVHRLHPESGQHKRWDLPEEPGSIVRHAQGGLVVAIRT 80

Query: 72  GIFSVRLQDDGHAQLSKLAQPAGLQADQRFNDGRCDRQGRFWSGVMCLDMSLARADGKLY 131
           G+F   L  D  A    LA P    +  RFNDGRCD  GRFW G +       R  G LY
Sbjct: 81  GMF--HLNTDTGALTLLLAAPYD-SSRIRFNDGRCDASGRFWCGTIYEPRD--RDGGTLY 135

Query: 132 RYDDAGLSAPMADGLIVQNGLAWSPDGKTMYLSDSHPSRRLVWAFDYDVDSGTPSRRRVF 191
            ++   L       ++  NGLA+S D + MY +++ P+ R +  +DYD+ +G  S  R+ 
Sbjct: 136 CFERNALRD-AHHAVVTSNGLAFSSDQRLMYHANT-PAHR-INLYDYDLATGATSNCRLL 192

Query: 192 ADLNHHR------GRPDGAAMDVDGCYWICANDAGCVLRFTPDGKLDRTIELPAKKPSMC 245
              +  +      GRPDGAA+D  G YW    + G VLR +P G++ + I LPA+ P+M 
Sbjct: 193 RQFDSDKSAPDYGGRPDGAAVDSQGAYWCAMFEGGRVLRLSPQGEILQEIRLPARCPTMV 252

Query: 246 AFGGDDMKTMIVTS 259
           AFGGDD++T+ +T+
Sbjct: 253 AFGGDDLRTLYITT 266


>gi|300310377|ref|YP_003774469.1| gluconolactonase [Herbaspirillum
           seropedicae SmR1]
          Length = 292

 Score =  117 bits (293), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 135/298 (45%), Gaps = 15/298 (5%)

Query: 1   MQVLPLNDQRYDVAESPFWHATQSAWYWVDI-PRKLICRQTADGDCQQWQLLEMVACIA- 58
           M V  L D  +++ E   W     + +W DI   +L       G  + W + E + C A 
Sbjct: 1   MNVQLLVDGHHELGEGVLWCDRSQSVFWTDIHASRLWNHDPQTGLTRSWGMPERLCCYAF 60

Query: 59  PDDDGGLIAGMHTGIFSVRLQDDGHAQLSKLAQPAGLQADQRFNDGRCDRQGRFWSGVMC 118
             D   L+ G+ + +    L     A + ++          R NDGRCDRQGRF  G + 
Sbjct: 61  TADPQQLLIGLESRLAFFNLSTGTIAPICRIEDDL---PSTRLNDGRCDRQGRFVFGTLN 117

Query: 119 LDMSLARADGKLYRYD-DAGLSAPMADGLIVQNGLAWSPDGKTMYLSDSHPSRRLVWAFD 177
            D   A      YR + D  L       + + N + +S DGK MY  DS   + +V   D
Sbjct: 118 EDAGRAPI-ASFYRLNTDLTLERLSLPSIAISNSICFSLDGKLMYHCDSMAGKIMVC--D 174

Query: 178 YDVDSGTPSRRRVFADLNHHRGRPDGAAMDVDGCYWICANDAGCVLRFTPDGKLDRTIEL 237
           YD  SG    +RVFAD+    G PDG+ +D +G  W        V+R+ PDG++DR + +
Sbjct: 175 YDTASGAVGGQRVFADVAQPGG-PDGSTIDAEGYLWNAQWGGARVVRYAPDGRIDRVVAI 233

Query: 238 PAKKPSMCAFGGDDMKTMIVTSISLGAP----AGDDGAGRIWTLNPG-VAGMHDAPFA 290
           P  +PS  AFGG    T+ VT+   G      A D  AG ++ +    V G+ +  FA
Sbjct: 234 PTSQPSCVAFGGAQFDTLYVTTAHEGMSAEQRAADPQAGALFAVALADVRGLPEVRFA 291


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,128,216
Number of extensions: 52917
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 2
Length of query: 292
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 208
Effective length of database: 1,222,130
Effective search space: 254203040
Effective search space used: 254203040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)