BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0189.p
         (198 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313890|ref|YP_003777982.1| nucleoside-diphosphate-sugar ep...   213   6e-57

>gi|300313890|ref|YP_003777982.1| nucleoside-diphosphate-sugar
           epimerase [Herbaspirillum seropedicae SmR1]
          Length = 284

 Score =  213 bits (543), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 100/196 (51%), Positives = 136/196 (69%), Gaps = 2/196 (1%)

Query: 1   VLHFGGRSLEAPFEQLMHANIQGTYNLYEGVHKRGIRRVIYASSSHAVGYYPTTRRIDAD 60
           ++H GG S+E PFE+++ ANI+G +++YE   + G++RVI+ASS+H  G+Y    RIDA 
Sbjct: 84  IIHLGGVSVERPFEEILEANIKGVFHIYEAARRHGVKRVIFASSNHVTGFYGQDERIDAR 143

Query: 61  SPLRPDGLYGLTKCFGESLSRYYFDRFGVETVCLRIGSCFPEPRNARMLATFLSYDDFVE 120
              RPDG YGL+K +GE ++++YFDR+GVETV +RIGS FPE  N RMLA+++S DDF +
Sbjct: 144 DMKRPDGYYGLSKSYGEDMAQFYFDRYGVETVSIRIGSIFPEATNRRMLASWMSMDDFEQ 203

Query: 121 LVRCALFTPRVGHTIVYGVSDNRIAWWDNGKAGHLGFVAQDSADAFAERFPFGGAWPAAD 180
           L+R +LF P VGHTIVYG+S N   WWDN  A HLG+  +DS++ F  +       PA D
Sbjct: 204 LLRRSLFIPDVGHTIVYGMSANAKTWWDNRYAAHLGYAPKDSSEIFRAKVE-AQPMPAPD 262

Query: 181 D-AGNFQGGPFILAGP 195
           D     QGG F  AGP
Sbjct: 263 DPVLTLQGGAFTTAGP 278


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.142    0.461 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 709,521
Number of extensions: 30789
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 118
Effective length of database: 1,241,070
Effective search space: 146446260
Effective search space used: 146446260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 128 (53.9 bits)