BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0188.p
         (224 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313947|ref|YP_003778039.1| cell division protein FtsI [Her...   225   2e-60
gi|300313890|ref|YP_003777982.1| nucleoside-diphosphate-sugar ep...    62   3e-11

>gi|300313947|ref|YP_003778039.1| cell division protein FtsI
           [Herbaspirillum seropedicae SmR1]
          Length = 656

 Score =  225 bits (574), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 101/138 (73%), Positives = 120/138 (86%), Gaps = 2/138 (1%)

Query: 59  IVACDLADKAAVYDMLEGVDAIHDFMKPFGFGQVTGIDLEHERKGLLPSTTWKRNAYRKP 118
           +V+CD        DM  GV+AIHDFMKPFGFGQ+TGIDLEHE++G+LPST WKR A+RKP
Sbjct: 381 VVSCDTYYYMLANDM--GVNAIHDFMKPFGFGQITGIDLEHEKRGILPSTEWKRTAFRKP 438

Query: 119 EQRKWYAGETISLGIGQGYNAFTPIQMAHATATLANNGIVMKPHLVKMIEDGVTHGRTVT 178
           EQ++W AG+T+SLGIGQGYN+FTP+Q+A ATA LANNG+VMKPHLVK++EDGVTH RT T
Sbjct: 439 EQKRWIAGDTVSLGIGQGYNSFTPLQLAQATAILANNGVVMKPHLVKIVEDGVTHERTET 498

Query: 179 VPKESYRIPLKQENIDVI 196
           VPKESYRIP+KQENID I
Sbjct: 499 VPKESYRIPMKQENIDFI 516


>gi|300313890|ref|YP_003777982.1| nucleoside-diphosphate-sugar
          epimerase [Herbaspirillum seropedicae SmR1]
          Length = 284

 Score = 62.4 bits (150), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 50/84 (59%), Gaps = 8/84 (9%)

Query: 5  MSDLQD----QVRPFKRLLLTGAAGNLGRVLRERLKPWTDVVRLSDIGDLGEAASG---- 56
          MS  QD    Q   F RLLLTGAAG +G+ LR RL  + +VVR++D+     A       
Sbjct: 1  MSQDQDVAAWQTARFSRLLLTGAAGGVGKQLRARLASFAEVVRVADLASAMAAVDPAAAH 60

Query: 57 EEIVACDLADKAAVYDMLEGVDAI 80
          EE + CDLAD+AAV  M+ G +AI
Sbjct: 61 EEALGCDLADRAAVDAMVAGCEAI 84


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 723,263
Number of extensions: 30436
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 2
Length of query: 224
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,231,600
Effective search space: 174887200
Effective search space used: 174887200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)