BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0186.p
         (157 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312673|ref|YP_003776765.1| hypothetical protein Hsero_3376...   245   1e-66

>gi|300312673|ref|YP_003776765.1| hypothetical protein Hsero_3376
           [Herbaspirillum seropedicae SmR1]
          Length = 156

 Score =  245 bits (625), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 115/153 (75%), Positives = 129/153 (84%)

Query: 5   RPPLPPFTRDTAIQKVRAAEDGWNTRNAEKVSLAYTEDSRWRNRADFVQGRAAIVAFLGK 64
           RPPLPPFTR+TAI+KVR AE+GWNTR+AEKV+LAYTEDS WRNRA+F QGR AI A L +
Sbjct: 4   RPPLPPFTRETAIEKVRLAENGWNTRDAEKVALAYTEDSWWRNRAEFAQGREAITALLKR 63

Query: 65  KWVREQQYRLIKELWAFEGNRIAVRFAYEWHDDSGNWFRSYGNENWEFDEHGLMRARHAS 124
           KW RE  YRL+KELWAF+G RIAVRFAYE+HDDSG W+R+YGNENWEFDE GLM  RHA 
Sbjct: 64  KWTRELDYRLVKELWAFDGARIAVRFAYEYHDDSGQWYRAYGNENWEFDEQGLMHHRHAC 123

Query: 125 INDLPIKESERKFHWDQSAPRPADHPSLSDLGL 157
           IN+ PIK  ERKF WD S PRPADHP LSD G+
Sbjct: 124 INEHPIKPEERKFLWDNSGPRPADHPGLSDFGI 156


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 543,908
Number of extensions: 21704
Number of successful extensions: 29
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,250,540
Effective search space: 98792660
Effective search space used: 98792660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)