BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0185.p
         (176 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313945|ref|YP_003778037.1| rod shape-determining MreC tran...   223   5e-60

>gi|300313945|ref|YP_003778037.1| rod shape-determining MreC
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 374

 Score =  223 bits (569), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 109/155 (70%), Positives = 126/155 (81%)

Query: 1   MDIPPLFKQGASARARAGFFALIAIIMLVVDSRMHALSMVRQAVGTMLYPFQVVAMVPRD 60
           M+IPPLFKQGASAR R   FAL++I+MLVVD+RMH L  +RQA+ T LYPFQ VAM+PRD
Sbjct: 20  MEIPPLFKQGASARVRVTVFALLSIVMLVVDARMHVLGTIRQALATALYPFQTVAMMPRD 79

Query: 61  AAYKVDDYFNSLTALQKENDALRRQQAMNAQLMQQERQMAAENIQLRKLLSMQQRMTNKS 120
           AA  + D   +L  LQKEN  LR+QQ +NAQL+QQER +AAEN QLRKLL MQQ++  KS
Sbjct: 80  AATSITDSLVALNTLQKENRELRQQQIVNAQLLQQERLLAAENAQLRKLLEMQQKVPVKS 139

Query: 121 VVGEILYDARDPFTRKIILNRGSQQGVAPGQPVRD 155
           +VGEILYDARDPFTRKIILNRGSQQGV  GQPV D
Sbjct: 140 IVGEILYDARDPFTRKIILNRGSQQGVEAGQPVID 174


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.133    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 412,712
Number of extensions: 13296
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,245,805
Effective search space: 120843085
Effective search space used: 120843085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)