BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0183.p
         (177 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310948|ref|YP_003775040.1| branched-chain amino acid ABC t...    65   3e-12
gi|300312761|ref|YP_003776853.1| branched-chain amino acid ABC t...    59   3e-10
gi|300309516|ref|YP_003773608.1| branched-chain amino acid ABC t...    54   9e-09

>gi|300310948|ref|YP_003775040.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 394

 Score = 65.1 bits (157), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 59/100 (59%), Gaps = 8/100 (8%)

Query: 43  IGIAMPLTGPXPPPPPGPAAAFGKSLVNAAEMAIDDANRRHPKVAGRAVRFKLLVVDERG 102
           IG A PL+GP        +   GKS+ N  ++A+ +ANRR  ++ G++ + +L+  D+R 
Sbjct: 42  IGFAGPLSGP--------SGGVGKSMQNGVQLALAEANRRGLRIGGKSWQLRLIAQDDRA 93

Query: 103 STRTAALAANYLIKQGVVASIGNGSTFTTLATARIFSDAG 142
              TA   A  L++Q V+A +G+ ++ T+LA A ++  AG
Sbjct: 94  DPATAEFVARSLVQQQVIAVVGHWTSGTSLAAAPVYHRAG 133


>gi|300312761|ref|YP_003776853.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 380

 Score = 58.5 bits (140), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 50/87 (57%)

Query: 56  PPPGPAAAFGKSLVNAAEMAIDDANRRHPKVAGRAVRFKLLVVDERGSTRTAALAANYLI 115
           P  GP A  GK   N A MA+D+ N +   + G+ V+F+L+  D+    + A   A  L+
Sbjct: 35  PLSGPNAHMGKDNENGARMAVDELNAKGFTIGGKKVKFELVGEDDASDPKQATAVATKLV 94

Query: 116 KQGVVASIGNGSTFTTLATARIFSDAG 142
            Q V A IG+ ++ TT+  ++I+SDAG
Sbjct: 95  DQKVAAVIGHLNSGTTIPASKIYSDAG 121


>gi|300309516|ref|YP_003773608.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 378

 Score = 53.5 bits (127), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 8/116 (6%)

Query: 27  AWLPAAVRAADVTEVPIGIAMPLTGPXPPPPPGPAAAFGKSLVNAAEMAIDDANRRHPKV 86
           A +PA   A +   V IG + PLTGP         A+ GK       MAI+  N +   V
Sbjct: 16  ALIPAFAMAQETQVVKIGFSSPLTGPQ--------ASAGKDNQGGLMMAIERLNAQPITV 67

Query: 87  AGRAVRFKLLVVDERGSTRTAALAANYLIKQGVVASIGNGSTFTTLATARIFSDAG 142
            G+ ++F ++  D++   ++    A  L  QGV A +G  ++  T+  +R+++DAG
Sbjct: 68  GGKKIKFDVIAEDDQADPKSGVAVAQKLADQGVKAIVGPYNSGVTIPASRVYNDAG 123


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 436,985
Number of extensions: 13464
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 3
Length of query: 177
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 98
Effective length of database: 1,245,805
Effective search space: 122088890
Effective search space used: 122088890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)