BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0182.p (238 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310948|ref|YP_003775040.1| branched-chain amino acid ABC t... 171 5e-44 gi|300309516|ref|YP_003773608.1| branched-chain amino acid ABC t... 100 1e-22 gi|300312761|ref|YP_003776853.1| branched-chain amino acid ABC t... 99 4e-22 gi|300313247|ref|YP_003777339.1| branched-chain amino acid ABC t... 76 2e-15 gi|300312236|ref|YP_003776328.1| amino acid ABC transporter peri... 63 2e-11 >gi|300310948|ref|YP_003775040.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 394 Score = 171 bits (433), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 127/224 (56%), Gaps = 1/224 (0%) Query: 11 LLADYLVDNLHALNAAVIDNGTRAGNMFGVAFKERFQARKGKVVSSDSIQFRSSDFNTIL 70 L A Y VD L ID+ T G F R +VV S+ ++SDFN L Sbjct: 167 LAAGYAVDKLETRTIVTIDDRTPFGQGLAEQFARTASERGAQVVGRYSVSDKTSDFNAAL 226 Query: 71 EATRLKRPDVIFFGGLADQAAALVRNVRRVGLQTTFVHGMNGTNGLNFLRDAGAAADGVL 130 R +PD+IFFGGL QA L +++RR+ L + GT GL FL AG A+G L Sbjct: 227 LEARKLQPDLIFFGGLDWQAGVLAKSIRRLKLHARLM-ASPGTLGLPFLMRAGPDANGAL 285 Query: 131 AINPGMPTDKMPGWKNFEKEYLQRFGGNINDYAPITYDAVQVLVAAVRDADSFLPARILA 190 + PG P DKMPGWK+F + Y + F +++ YA Y+A Q ++ +R A S P RI Sbjct: 286 VLEPGPPQDKMPGWKSFRQRYSENFDSDMDLYAVFAYEAAQAIIQGIRQAGSADPERIAE 345 Query: 191 ALYKVRYSGLTGTISFDRNGNLLNPIFTIYQMKDMHWLPLQTYD 234 A++++R+ G++G ++F+ G+LL P FT+Y++KD W P+ ++ Sbjct: 346 AMHRLRFEGVSGPVAFNEEGDLLQPSFTMYEVKDQRWQPVARFN 389 >gi|300309516|ref|YP_003773608.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 378 Score = 100 bits (249), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 105/223 (47%), Gaps = 2/223 (0%) Query: 12 LADYLVDNLHALNAAVIDNGTRAGNMFGVAFKERFQARKGKVVSSDSIQFRSSDFNTILE 71 +A Y L AVID+ T G F + +A VVS+D +++DF IL Sbjct: 157 MALYAAKELKFKRVAVIDDRTAYGQGLAQEFIKVAKANGIDVVSTDFTNDKATDFTAILT 216 Query: 72 ATRLKRPDVIFFGGLADQAAALVRNVRRVGLQTTFVHGMNGTNGLNFLRDAG-AAADGVL 130 + + K+PD +F GG A Q + R ++++G+ + G +G R G A + V Sbjct: 217 SIKGKKPDAVFLGGYAPQGGPIKRQMKQLGVDVPLMGG-DGICSPEMGRLGGDAIGESVY 275 Query: 131 AINPGMPTDKMPGWKNFEKEYLQRFGGNINDYAPITYDAVQVLVAAVRDADSFLPARILA 190 G DK K F EY +++ YA YD + ++ A++ A+S P + Sbjct: 276 CTQGGTMLDKAKEGKVFSDEYQKKYNRPAETYAVSFYDGMMLIAQAMKQANSVDPKQFGP 335 Query: 191 ALYKVRYSGLTGTISFDRNGNLLNPIFTIYQMKDMHWLPLQTY 233 AL K+ Y G+ G FD N +L T+Y+ KD +PL +Y Sbjct: 336 ALAKISYKGVAGQYDFDANHDLKQSPVTVYRFKDGLPVPLTSY 378 >gi|300312761|ref|YP_003776853.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 380 Score = 98.6 bits (244), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 109/229 (47%), Gaps = 10/229 (4%) Query: 1 MIGHSGQGAPLLADYLVDNLHALNAAVIDNGTRAGNMFGVAFKERFQARKGKVVSSDSIQ 60 ++ + Q L Y V L AVID+ T G F + +A G +V + Sbjct: 145 VVANDAQLGAALGKYAVQKLGTKQIAVIDDRTAYGQGVADEFAKGAKAAGGTIVGTQYTN 204 Query: 61 FRSSDFNTILEATRLKRPDVIFFGGLADQAAALVRNVRRVGLQTTFVHGMNGTNGLNFLR 120 +++DFN IL + + K+PDV+FFGG+ ++R ++++G+ F+ G +G+ Sbjct: 205 DKATDFNAILTSLKGKKPDVVFFGGMDAVGGPMLRQMKQLGISAKFMGG----DGICTGS 260 Query: 121 DAGAAADG------VLAINPGMPTDKMPGWKNFEKEYLQRFGGNINDYAPITYDAVQVLV 174 G A DG + A G+ G +F Y ++FG ++ A YDA + Sbjct: 261 LPGLAGDGLGDDQVICAEAGGVDEAGKKGMDDFRAAYKKKFGIDVVYNAAYAYDATMTVA 320 Query: 175 AAVRDADSFLPARILAALYKVRYSGLTGTISFDRNGNLLNPIFTIYQMK 223 A+ A S P + L L K+ + G+TG I+FD G++ + T+Y K Sbjct: 321 DAMAKAGSADPKKYLPELAKISHKGVTGVIAFDAKGDIKDGSLTLYTYK 369 >gi|300313247|ref|YP_003777339.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 385 Score = 76.3 bits (186), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 84/183 (45%), Gaps = 27/183 (14%) Query: 62 RSSDFNTILEATRLKRPDVIFFGGLADQAAALVRNVRRVGLQTTFVHGMNGTNGLNFLRD 121 RS+DF+ L+A + DVI F GL QA A F+ G N T L Sbjct: 206 RSTDFHAALKAAEAHQADVIVFVGLYPQARA-------------FIDGANRTRTTARLLL 252 Query: 122 AGAAAD-----------GVLAINPGMPTDKMPGWKNFEKEYLQRFGGNINDYAPITYDAV 170 G A++ VL P P WK + Y +RFG Y+ YDA Sbjct: 253 TGGASNLSLPAPLELRLHVLEYEIARP--HCPQWKVVTQTYQRRFGAAPTTYSFYAYDAA 310 Query: 171 QVLVAAVRDADSFLPARILAALYKVRYSGLTGTISFDRNGNLLNPIFTIYQMKDMHWLPL 230 VL AA+ A S +I AL+++R++GL GT+SFD G +P +T+ + ++ W + Sbjct: 311 SVLTAAIVQAGSDNGDKIATALHRMRHAGLHGTLSFDATGANAHPRYTLLRYQE-RWQAV 369 Query: 231 QTY 233 + + Sbjct: 370 EVF 372 >gi|300312236|ref|YP_003776328.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 385 Score = 63.2 bits (152), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 6/170 (3%) Query: 42 FKERFQARKGKVVSSDSIQFRSSDFNTILEATRLKRPDVIFFGGLADQAAALVRNVRRVG 101 FK + +K V ++++ DF L + PD I LA++AA ++ R +G Sbjct: 184 FKATLEHQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTRALG 243 Query: 102 LQTTFVHGMNGTNGLNFLRDAGAAADGVLAINPGMPTDKMPGWKNFEKEYLQRFGGNIND 161 ++ F+ G NG N A A D L +P ++ P K F Y +FG + + Sbjct: 244 MKQPFIGG-NGLNSPKLFEIAKDAGDNTLMGSPWSAENQTPANKAFITAYKAKFGADPDQ 302 Query: 162 YAPITYDAVQVLVAAVRD---ADSFLPAR--ILAALYKVRYSGLTGTISF 206 +A YDA+ ++ A+++ + + R + AAL V+ G TG +F Sbjct: 303 FAAQAYDAMYIVADALKNVKLSGNLAKDRDALRAALPAVKIDGATGKFAF 352 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.138 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 779,521 Number of extensions: 32906 Number of successful extensions: 106 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 100 Number of HSP's successfully gapped: 6 Length of query: 238 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 156 Effective length of database: 1,231,600 Effective search space: 192129600 Effective search space used: 192129600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)