BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0181.p (371 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310948|ref|YP_003775040.1| branched-chain amino acid ABC t... 313 1e-86 gi|300312761|ref|YP_003776853.1| branched-chain amino acid ABC t... 241 6e-65 gi|300309516|ref|YP_003773608.1| branched-chain amino acid ABC t... 223 2e-59 gi|300313247|ref|YP_003777339.1| branched-chain amino acid ABC t... 167 2e-42 gi|300310991|ref|YP_003775083.1| branched-chain amino acid ABC t... 148 8e-37 >gi|300310948|ref|YP_003775040.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 394 Score = 313 bits (802), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 155/362 (42%), Positives = 228/362 (62%) Query: 9 APLQAASDVRLVQIGFAGPLSGSSAQMGRSQVQAVELALAELNARGISVGGRPLLFKLLT 68 APL + + IGFAGPLSG S +G+S V+LALAE N RG+ +GG+ +L+ Sbjct: 29 APLPDRQETATLAIGFAGPLSGPSGGVGKSMQNGVQLALAEANRRGLRIGGKSWQLRLIA 88 Query: 69 QDDRGDIHTATLVANYLVRSEVVAVIGHWNTGASIPAAHIYHAAGIPQIAPGSTGRQYTQ 128 QDDR D TA VA LV+ +V+AV+GHW +G S+ AA +YH AG+ Q+ P + R+ T Sbjct: 89 QDDRADPATAEFVARSLVQQQVIAVVGHWTSGTSLAAAPVYHRAGVIQVTPSAMSRRLTA 148 Query: 129 NGYADSFRIVGHDDDGGRYASAFALQQLKARRIAVIHDDTGFGAMLANQFRQGLQDKGSA 188 Y FR + +++ GR A+ +A+ +L+ R I I D T FG LA QF + ++G+ Sbjct: 149 MSYPRIFRTIPNNESLGRLAAGYAVDKLETRTIVTIDDRTPFGQGLAEQFARTASERGAQ 208 Query: 189 VVTQQTISSKTSDFNAALTAVRNTDADLIFFGGLGPQAAALKLAMRHAGVNATLLAADGI 248 VV + ++S KTSDFNAAL R DLIFFGGL QA L ++R ++A L+A+ G Sbjct: 209 VVGRYSVSDKTSDFNAALLEARKLQPDLIFFGGLDWQAGVLAKSIRRLKLHARLMASPGT 268 Query: 249 VSPTFLRLTGADGEGTFGIAPGQAQEKMAGWKKFQDKFAATYGGPIELFAPFAYDAAYAI 308 + FL G D G + PG Q+KM GWK F+ +++ + ++L+A FAY+AA AI Sbjct: 269 LGLPFLMRAGPDANGALVLEPGPPQDKMPGWKSFRQRYSENFDSDMDLYAVFAYEAAQAI 328 Query: 309 AAAIQQADSLEPRRIAASLHQLKYKGLTGTIAFDGEGNLLNPAYTVYRVRGGKWTPVQTF 368 I+QA S +P RIA ++H+L+++G++G +AF+ EG+LL P++T+Y V+ +W PV F Sbjct: 329 IQGIRQAGSADPERIAEAMHRLRFEGVSGPVAFNEEGDLLQPSFTMYEVKDQRWQPVARF 388 Query: 369 GG 370 G Sbjct: 389 NG 390 >gi|300312761|ref|YP_003776853.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 380 Score = 241 bits (616), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 132/355 (37%), Positives = 207/355 (58%), Gaps = 5/355 (1%) Query: 13 AASDVRLVQIGFAGPLSGSSAQMGRSQVQAVELALAELNARGISVGGRPLLFKLLTQDDR 72 AA +V+I GPLSG +A MG+ +A+ ELNA+G ++GG+ + F+L+ +DD Sbjct: 21 AAYSQEVVKIAHVGPLSGPNAHMGKDNENGARMAVDELNAKGFTIGGKKVKFELVGEDDA 80 Query: 73 GDIHTATLVANYLVRSEVVAVIGHWNTGASIPAAHIYHAAGIPQIAPGSTGRQYTQNGYA 132 D AT VA LV +V AVIGH N+G +IPA+ IY AGIPQ++P +T +YTQ G+ Sbjct: 81 SDPKQATAVATKLVDQKVAAVIGHLNSGTTIPASKIYSDAGIPQVSPSATNPKYTQQGFK 140 Query: 133 DSFRIVGHDDDGGRYASAFALQQLKARRIAVIHDDTGFGAMLANQFRQGLQDKGSAVVTQ 192 +FR+V +D G +A+Q+L ++IAVI D T +G +A++F +G + G +V Sbjct: 141 TAFRVVANDAQLGAALGKYAVQKLGTKQIAVIDDRTAYGQGVADEFAKGAKAAGGTIVGT 200 Query: 193 QTISSKTSDFNAALTAVRNTDADLIFFGGLGPQAAALKLAMRHAGVNATLLAADGIVSPT 252 Q + K +DFNA LT+++ D++FFGG+ + M+ G++A + DGI + + Sbjct: 201 QYTNDKATDFNAILTSLKGKKPDVVFFGGMDAVGGPMLRQMKQLGISAKFMGGDGICTGS 260 Query: 253 FLRLTGADGEGTFGIAPGQAQEKMAGWKKFQDKFAATY----GGPIELFAPFAYDAAYAI 308 L G DG G + +A KK D F A Y G + A +AYDA + Sbjct: 261 LPGLAG-DGLGDDQVICAEAGGVDEAGKKGMDDFRAAYKKKFGIDVVYNAAYAYDATMTV 319 Query: 309 AAAIQQADSLEPRRIAASLHQLKYKGLTGTIAFDGEGNLLNPAYTVYRVRGGKWT 363 A A+ +A S +P++ L ++ +KG+TG IAFD +G++ + + T+Y +GG+ T Sbjct: 320 ADAMAKAGSADPKKYLPELAKISHKGVTGVIAFDAKGDIKDGSLTLYTYKGGQRT 374 >gi|300309516|ref|YP_003773608.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 378 Score = 223 bits (568), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 122/356 (34%), Positives = 197/356 (55%), Gaps = 2/356 (0%) Query: 14 ASDVRLVQIGFAGPLSGSSAQMGRSQVQAVELALAELNARGISVGGRPLLFKLLTQDDRG 73 A + ++V+IGF+ PL+G A G+ + +A+ LNA+ I+VGG+ + F ++ +DD+ Sbjct: 24 AQETQVVKIGFSSPLTGPQASAGKDNQGGLMMAIERLNAQPITVGGKKIKFDVIAEDDQA 83 Query: 74 DIHTATLVANYLVRSEVVAVIGHWNTGASIPAAHIYHAAGIPQIAPGSTGRQYTQNGYAD 133 D + VA L V A++G +N+G +IPA+ +Y+ AGI +A ++ + TQ G+A Sbjct: 84 DPKSGVAVAQKLADQGVKAIVGPYNSGVTIPASRVYNDAGI-VVATVASNPKITQQGFAT 142 Query: 134 SFRIVGHDDDGGRYASAFALQQLKARRIAVIHDDTGFGAMLANQFRQGLQDKGSAVVTQQ 193 FR+ D G + +A ++LK +R+AVI D T +G LA +F + + G VV+ Sbjct: 143 LFRVAASDSQLGGKMALYAAKELKFKRVAVIDDRTAYGQGLAQEFIKVAKANGIDVVSTD 202 Query: 194 TISSKTSDFNAALTAVRNTDADLIFFGGLGPQAAALKLAMRHAGVNATLLAADGIVSPTF 253 + K +DF A LT+++ D +F GG PQ +K M+ GV+ L+ DGI SP Sbjct: 203 FTNDKATDFTAILTSIKGKKPDAVFLGGYAPQGGPIKRQMKQLGVDVPLMGGDGICSPEM 262 Query: 254 LRLTG-ADGEGTFGIAPGQAQEKMAGWKKFQDKFAATYGGPIELFAPFAYDAAYAIAAAI 312 RL G A GE + G +K K F D++ Y P E +A YD IA A+ Sbjct: 263 GRLGGDAIGESVYCTQGGTMLDKAKEGKVFSDEYQKKYNRPAETYAVSFYDGMMLIAQAM 322 Query: 313 QQADSLEPRRIAASLHQLKYKGLTGTIAFDGEGNLLNPAYTVYRVRGGKWTPVQTF 368 +QA+S++P++ +L ++ YKG+ G FD +L TVYR + G P+ ++ Sbjct: 323 KQANSVDPKQFGPALAKISYKGVAGQYDFDANHDLKQSPVTVYRFKDGLPVPLTSY 378 >gi|300313247|ref|YP_003777339.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 385 Score = 167 bits (422), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 129/378 (34%), Positives = 192/378 (50%), Gaps = 25/378 (6%) Query: 2 VLAG--LLTAPLQA--ASDVRLVQIGFAGPLSGSSAQMGRSQVQAVELALAELNARGISV 57 VLAG LL A +QA A + + + +GF G LS AQ S +Q +LA+ E NA ++ Sbjct: 9 VLAGVLLLWAFMQAGWAQERKTIALGFTGRLSEPIAQ---SALQGAQLAIDEANA--LAA 63 Query: 58 GGR-PLLFKLLTQDDRGDIHTATLVANYLVRSEVVAVIGHWNTGASIPAAHIYHAAGIPQ 116 R PL F+LL QDD G+ + A +A Y V+ +V VIG W++ A++ A IY +A IPQ Sbjct: 64 KRRSPLRFELLPQDDHGNENFAVNIARYYVKEKVAGVIGPWSSDAALATAAIYESAQIPQ 123 Query: 117 IAPGSTGRQYTQNGYADSFRIVGHDDDGGRYASAFALQQLKARRIAVIHDDTGFGAMLAN 176 I +T Q+T G FR+VG + + A + L+ RRI VI D + LA+ Sbjct: 124 IGFTATSSQWTGMGNRMPFRVVGGTRELAATLAEVATRSLQGRRIFVIQSDAAYSRALAD 183 Query: 177 QFRQGLQDKGSAV-VTQQTISSKTSDFNAALTAVRNTDADLIFFGGLGPQAAALKLAMRH 235 + L + + + + +++DF+AAL A AD+I F GL PQA A Sbjct: 184 TLVENLGGSAQQIALARYQVGRRSTDFHAALKAAEAHQADVIVFVGLYPQARAFIDGANR 243 Query: 236 AGVNATLLAADG-----IVSPTFLRLTGADGEGTFGIAPGQAQEKMAGWKKFQDKFAATY 290 A LL G + +P LRL + E A+ WK + + Sbjct: 244 TRTTARLLLTGGASNLSLPAPLELRLHVLEYE--------IARPHCPQWKVVTQTYQRRF 295 Query: 291 GGPIELFAPFAYDAAYAIAAAIQQADSLEPRRIAASLHQLKYKGLTGTIAFDGEGNLLNP 350 G ++ +AYDAA + AAI QA S +IA +LH++++ GL GT++FD G +P Sbjct: 296 GAAPTTYSFYAYDAASVLTAAIVQAGSDNGDKIATALHRMRHAGLHGTLSFDATGANAHP 355 Query: 351 AYTVYRVRGGKWTPVQTF 368 YT+ R + +W V+ F Sbjct: 356 RYTLLRYQ-ERWQAVEVF 372 >gi|300310991|ref|YP_003775083.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 373 Score = 148 bits (373), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 98/344 (28%), Positives = 168/344 (48%), Gaps = 19/344 (5%) Query: 20 VQIGFAGPLSGSSAQMGRSQVQAVELALAELNARGISVGGRPLLFKLLTQDDRGDIHTAT 79 V+I AGP++G+ AQ G A+ ++NA G + G + F+ + DD + A Sbjct: 29 VKIAIAGPMTGAVAQYGDMVKAGALTAIEQINAAGGANGNK---FEAVMMDDACEPKQAV 85 Query: 80 LVANYLVRSEVVAVIGHWNTGASIPAAHIYHAAGIPQIAPGSTGRQYTQ-NGYADSFRIV 138 VAN +V + VIGH +G++IPA+ IY G+ I P +T Q T+ + FR + Sbjct: 86 AVANKIVSQGIKYVIGHVCSGSTIPASDIYENEGVVMITPSATAPQLTEAKPHKFIFRTI 145 Query: 139 GHDDDGGRYASAFALQQLKARRIAVIHDDTGFGAMLANQFRQGLQDKGSAVVTQQTISSK 198 G DD G A+ + +++LK +++AV+HD +G +A+ + L VV + I++ Sbjct: 146 GRDDQQGPAAARYVIEKLKPKKVAVLHDKQSYGQGVASSVKAALDAAKVPVVVFEGINAG 205 Query: 199 TSDFNAALTAVRNTDADLIFFGGLGPQAAALKLAMRHAGVNATLLAADGIVSPTFLRLTG 258 SD++A +T +++ D ++FGG P+ + R G+ A + +G+ + + G Sbjct: 206 DSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMRQAREQGIKAVFMGPEGVGNKDITAIAG 265 Query: 259 ADGEGT-------FGIAPGQAQEKMAGWKKFQDKFAATYGGPIELFAPFAYDAAYAIAAA 311 EG F P A A +D GP ++ AY IA A Sbjct: 266 PASEGMLVTLPADFAADPANAALVKAFAAAKRDP-----NGPFQM---PAYSGVKIIADA 317 Query: 312 IQQADSLEPRRIAASLHQLKYKGLTGTIAFDGEGNLLNPAYTVY 355 I A S +P ++AA +H +K G + +D +G+L + + V+ Sbjct: 318 IAGAKSTDPEKVAAYIHANSFKTPIGNVEYDKKGDLKSFKFVVF 361 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,213,860 Number of extensions: 53422 Number of successful extensions: 227 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 218 Number of HSP's successfully gapped: 7 Length of query: 371 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 284 Effective length of database: 1,207,925 Effective search space: 343050700 Effective search space used: 343050700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)