BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0178.p
         (100 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313943|ref|YP_003778035.1| Asp-tRNAAsn/Glu-tRNAGln amidotr...   167   1e-43

>gi|300313943|ref|YP_003778035.1| Asp-tRNAAsn/Glu-tRNAGln
           amidotransferase subunit C [Herbaspirillum seropedicae
           SmR1]
          Length = 100

 Score =  167 bits (423), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 81/100 (81%), Positives = 92/100 (92%)

Query: 1   MTLALSDVKRIANLSRLELTDEQAGQTLEKLNSIFSLVEQMRAVDTTGIEPLSHPIAALT 60
           M+L+LSDVKRIANLSRLELT+ QA QTLEKLN IF+LVEQM+AVDT G+EPLSHPIAA+ 
Sbjct: 1   MSLSLSDVKRIANLSRLELTEAQADQTLEKLNGIFALVEQMKAVDTRGVEPLSHPIAAIE 60

Query: 61  PDLSLRLRDDAVTETNQREAYQQPAPATQDGLYLVPKVIE 100
           P L+LRLR+D VTETN+R+ YQQPAPATQDGLYLVPKVIE
Sbjct: 61  PALALRLREDVVTETNRRDDYQQPAPATQDGLYLVPKVIE 100


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.129    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 286,752
Number of extensions: 10103
Number of successful extensions: 37
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 1
Length of query: 100
Length of database: 1,619,870
Length adjustment: 69
Effective length of query: 31
Effective length of database: 1,293,155
Effective search space: 40087805
Effective search space used: 40087805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 123 (52.0 bits)