BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0170.p
         (883 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313959|ref|YP_003778051.1| DNA topoisomerase III protein [...  1582   0.0  

>gi|300313959|ref|YP_003778051.1| DNA topoisomerase III protein
           [Herbaspirillum seropedicae SmR1]
          Length = 892

 Score = 1582 bits (4097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 760/825 (92%), Positives = 789/825 (95%), Gaps = 4/825 (0%)

Query: 1   MSKTLIIAEKPSVANDIAKTLGGFTKHDEYFESDEYVLSSAVGHLLEIAVPEEYDVKRGK 60
           MSKTLIIAEKPSVANDIAKTLGGFTKHDEYFESD+Y+LSSAVGHLLEIAVPEEYDVKRGK
Sbjct: 1   MSKTLIIAEKPSVANDIAKTLGGFTKHDEYFESDQYILSSAVGHLLEIAVPEEYDVKRGK 60

Query: 61  WTFTHLPMIPPHFALNPIAKTESRLKALNKLIKRKDVTGLINACDAGREGELIFRLIAQY 120
           W+FTHLPMIPPHFALNPIAKTESRLK L+KLIKRKDVT LINACDAGREGELIFRLIAQY
Sbjct: 61  WSFTHLPMIPPHFALNPIAKTESRLKVLSKLIKRKDVTTLINACDAGREGELIFRLIAQY 120

Query: 121 TKAKQPVQRLWLQSMTPGAIRDGFANLRKDEEMLPLADAARCRSEADWLIGINGTRAMTA 180
           TKAKQPV+RLWLQSMTPGAIR+GFA+LR DEEMLPLA+AARCRSEADWLIGINGTRAMTA
Sbjct: 121 TKAKQPVKRLWLQSMTPGAIREGFAHLRDDEEMLPLANAARCRSEADWLIGINGTRAMTA 180

Query: 181 FNSKEGGFYLTTVGRVQTPTLSIVVEREEKIKKFVSRDFWEVRADFVCAAGIYEGRWLDK 240
           FNSKEGGFYLTTVGRVQTPTLSIVVEREEKIKKFV RD+WEV A+FVCAAGIY+GRWLDK
Sbjct: 181 FNSKEGGFYLTTVGRVQTPTLSIVVEREEKIKKFVPRDYWEVHAEFVCAAGIYKGRWLDK 240

Query: 241 QHKKDENDPEKRPERLWSKAAAESIVAACRGKIGNVTEESKPTTQMAPGLFDLTSLQREA 300
            HKKDE DPEKRPERLWSKAAA+SIVAACR K GNVTEESKPTTQM+PGLFDLTSLQREA
Sbjct: 241 GHKKDEADPEKRPERLWSKAAADSIVAACRDKPGNVTEESKPTTQMSPGLFDLTSLQREA 300

Query: 301 NSRFGFSAKNTLGLAQALYEKHKVLTYPRTDSRHLPEDYVQTVKDTLDTLSESNNYHQFS 360
           NSRFGFSAKNTLGLAQALYEKHKVLTYPRTDSRHLPEDY+ TVKDT++ L+E+NNYHQFS
Sbjct: 301 NSRFGFSAKNTLGLAQALYEKHKVLTYPRTDSRHLPEDYINTVKDTMEALAENNNYHQFS 360

Query: 361 KQILKQGWVKPNKRIFDNTKISDHFAIIPTTQAPKNLSEPEQKLYDLVTRRFMAVFFPAA 420
           KQILKQGWVKPNKRIFDNTKISDHFAIIPTTQ PKNLSEPEQKLYDLVTRRFMAVFFP A
Sbjct: 361 KQILKQGWVKPNKRIFDNTKISDHFAIIPTTQVPKNLSEPEQKLYDLVTRRFMAVFFPPA 420

Query: 421 EFQVTTRFTEVSGHQFKTEGKVMTNPGWLAIYGKDV-VDEKD-ENSGTLVAVAKDEKVKT 478
           EFQVTTR+TEVSGHQFK+EGKVM NPGWLAIYGK V  D+KD E  G LVAVA  EKVKT
Sbjct: 421 EFQVTTRYTEVSGHQFKSEGKVMINPGWLAIYGKQVEEDDKDKEGGGNLVAVAPGEKVKT 480

Query: 479 DKITANGLVTKPPARYTEATLLSAMEGAGKLIDSDELREAMAGKGLGTPATRAAIIEGLI 538
           DK+TANGLVTKPPARYTEATLLSAMEGAGKL+DSDELREAMAGKGLGTPATRAAIIEGL+
Sbjct: 481 DKVTANGLVTKPPARYTEATLLSAMEGAGKLVDSDELREAMAGKGLGTPATRAAIIEGLL 540

Query: 539 NEKYLLREGREMMPTAKAFQLMTLLHGLGVDELTEPELTGEWEQKLAQMERGKISREEFM 598
           NEKYL+REGREMMPTAKAFQLMTLLHGLGVDELTEPELTGEWE KLAQMERGKISR+EFM
Sbjct: 541 NEKYLIREGREMMPTAKAFQLMTLLHGLGVDELTEPELTGEWEHKLAQMERGKISRDEFM 600

Query: 599 REIAQMTQIIVKRAKEYDNDTIPGDYATLKTPCPNCGSVVKENYRRFACTKCEFSMSKTP 658
           REIAQMTQIIVKRAKEYDNDTIPGDYATLKTPCPNCG VVKENYRRFACTKCEFSMSK P
Sbjct: 601 REIAQMTQIIVKRAKEYDNDTIPGDYATLKTPCPNCGGVVKENYRRFACTKCEFSMSKVP 660

Query: 659 AGRQFEIPEVEELLANRTIGPLQGFRSKMGRPFAAILKISRDEEIKNFKLEFDFGQN--D 716
            GRQFEI EVEELL NRTIGPLQGFRSKMGRPFAAILKISRDEEIKNFKLEFDFGQ+  +
Sbjct: 661 GGRQFEIAEVEELLQNRTIGPLQGFRSKMGRPFAAILKISRDEEIKNFKLEFDFGQDQAE 720

Query: 717 DEGGEPVDFSEQTPLGPCPKCGSGVYEMGLAYVCEKQVAKPKACDFRSGRIILQQEILPE 776
            EGGEPVDFSEQTPLG CPKCGSGVYEMGLAYVCEK VAKPKACDFRS RIILQQEILPE
Sbjct: 721 GEGGEPVDFSEQTPLGACPKCGSGVYEMGLAYVCEKTVAKPKACDFRSSRIILQQEILPE 780

Query: 777 QMAKLLNEGKTDLLPGFISQRTRRPFKAFLSRGKDGKISFEFEER 821
           QMAKLLN+GKTDLLPGFISQRTRRPFKAFL RGKDGKISFEFEER
Sbjct: 781 QMAKLLNDGKTDLLPGFISQRTRRPFKAFLVRGKDGKISFEFEER 825


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,499,343
Number of extensions: 102629
Number of successful extensions: 280
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 1
Length of query: 883
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 789
Effective length of database: 1,174,780
Effective search space: 926901420
Effective search space used: 926901420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 135 (56.6 bits)