BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0168.p
         (371 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313961|ref|YP_003778053.1| SMF protein involved in DNA upt...   391   e-110

>gi|300313961|ref|YP_003778053.1| SMF protein involved in DNA uptake
           protein [Herbaspirillum seropedicae SmR1]
          Length = 378

 Score =  391 bits (1005), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/358 (61%), Positives = 264/358 (73%), Gaps = 1/358 (0%)

Query: 15  WIRFMQTDGVGVDMARRLLSTFGLPGDIFSAGFDELRAVAPERIARALLQAPTAMMQNRL 74
           W+R    +GVG   ARRLL+ FGLPG ++ A    L AV    +A  LL+APT  ++ ++
Sbjct: 21  WLRLSLAEGVGPATARRLLAAFGLPGQLWQADASALAAVVSPALAARLLRAPTPAVRAQI 80

Query: 75  ELTLDWAAQPGNRILTLADADYPQALLNIADPPILLYIKGRSELLSATSLAVVGSRNATV 134
             TL W  QPG+ ILTLAD+ YP ALL+IADPP+LLY++G    L A ++AVVGSRNAT 
Sbjct: 81  AATLAWLQQPGHAILTLADSRYPPALLDIADPPLLLYLRGDPAWLGAEAVAVVGSRNATA 140

Query: 135 QGVQNAERFSEAASHAALTVVSGLALGIDAAAHHGGLRGRGSSVAVIGTGIDIVYPMRNR 194
           QG+ +A RFS   S A L++VSGLALGIDAAAH GGL G GS+VAVIGTGIDIVYP R+ 
Sbjct: 141 QGIAHASRFSRELSRAGLSIVSGLALGIDAAAHEGGLDGPGSTVAVIGTGIDIVYPRRHE 200

Query: 195 GLAQRLADEGCIVSEYPLGMPPVAANFPRRNRIISGLARAVLVVEAAAQSGSLITARTAA 254
            LA R+A  GCIVSEYPLG PP+A+NFPRRNR+ISGLARAVLVVEAAAQSGSLITAR AA
Sbjct: 201 ALAARIAAAGCIVSEYPLGTPPLASNFPRRNRLISGLARAVLVVEAAAQSGSLITARMAA 260

Query: 255 EQGRDVFAIPGSIHSPLSKGCHQLIKQGAKLVESEQDILEELGKLPLLARQSPAPAITSA 314
           EQGRDVFAIPGSIH+PL+KGCHQLI+QGAKLVE+ QD+L+EL     +    P+P     
Sbjct: 261 EQGRDVFAIPGSIHAPLAKGCHQLIRQGAKLVETTQDMLDELPSRQAVRVAHPSPQSQVD 320

Query: 315 DKHADDL-LGAMGFDPVDADALSMRSGLDAAALSERLLTLELDGAVECLPGGRYRRVN 371
           D     L + AM  DPVD D L+ R GL+AA L+  LLTLEL G +E LPG  YRR+ 
Sbjct: 321 DDAMTSLVMQAMAHDPVDIDTLAARCGLEAAVLAGLLLTLELAGRIELLPGALYRRLE 378


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,133,339
Number of extensions: 47097
Number of successful extensions: 198
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 284
Effective length of database: 1,207,925
Effective search space: 343050700
Effective search space used: 343050700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)