BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0157.p
         (160 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313971|ref|YP_003778063.1| hypothetical protein Hsero_4689...   188   2e-49

>gi|300313971|ref|YP_003778063.1| hypothetical protein Hsero_4689
           [Herbaspirillum seropedicae SmR1]
          Length = 136

 Score =  188 bits (478), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 86/123 (69%), Positives = 103/123 (83%), Gaps = 1/123 (0%)

Query: 1   MAGKADKQACPCGKGVYGACCGRFIAGEAVPATAEQLMRSRYTAFSLREEEYLRATWHPD 60
           M+ K DK ACPCG+  +  CCGRFI G  +PATA+ LMRSRY+AF+LR+E YLRATW PD
Sbjct: 1   MSNKKDK-ACPCGQPSFDKCCGRFITGGQIPATADLLMRSRYSAFALRDEAYLRATWFPD 59

Query: 61  TLPDEPITAESDVKWIALDVIKHKHVKDTDEATVEFVARFKVGGRGHRLHEVSSFVRQPD 120
           TLP+E +T+E+DVKWI LD+ KH+HV  +DEATVEFVARFKV GR HRLHE+S+FVRQPD
Sbjct: 60  TLPEEELTSETDVKWIGLDIKKHQHVAGSDEATVEFVARFKVAGRAHRLHEISNFVRQPD 119

Query: 121 AAG 123
           AAG
Sbjct: 120 AAG 122


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 542,874
Number of extensions: 21344
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,250,540
Effective search space: 102544280
Effective search space used: 102544280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)