BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0156.p
         (540 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313972|ref|YP_003778064.1| acetyl/propionyl-CoA carboxylas...  1013   0.0  

>gi|300313972|ref|YP_003778064.1| acetyl/propionyl-CoA carboxylase
           subunit beta [Herbaspirillum seropedicae SmR1]
          Length = 544

 Score = 1013 bits (2618), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/544 (89%), Positives = 516/544 (94%), Gaps = 4/544 (0%)

Query: 1   MPQLDSKLNTRSEDFQSNMAAMQVIVDDLKEKIAVIAQGGGEAARNKHLARGKLLPRDRV 60
           MPQ++SKLN RSEDFQ+N AAMQ IVDDL+EKIA IA+GGG+AAR KHLARGKLLPRDRV
Sbjct: 1   MPQIESKLNPRSEDFQNNRAAMQRIVDDLREKIAAIAEGGGQAAREKHLARGKLLPRDRV 60

Query: 61  QMLLDPGTPFLEFSQLAAYAMYQEK----EGKDAAPSAGIITGIGRVAGQECVIVCNDAT 116
           QMLLDPGTPFLEFSQLAAY MY+EK    + KDAAPSAGIITGIGRVAGQECVIVCNDAT
Sbjct: 61  QMLLDPGTPFLEFSQLAAYGMYREKDRDGQPKDAAPSAGIITGIGRVAGQECVIVCNDAT 120

Query: 117 VKGGTYYPMTAKKHLRAQEIAEFNHLPCIYLVDSGGANLPNQDEVFPDRDHFGRIFFNQA 176
           VKGGTYYPMTAKKHLRAQEIAEFNHLPCIYLVDSGGANLPNQDEVFPDRDHFGRIF+NQA
Sbjct: 121 VKGGTYYPMTAKKHLRAQEIAEFNHLPCIYLVDSGGANLPNQDEVFPDRDHFGRIFYNQA 180

Query: 177 NLSAKGIPQIAVVMGSCTAGGAYVPAMSDESIIVKDQGTIFLAGPPLVKAATGEVVTAED 236
           NLSAKGI QIAVVMGSCTAGGAYVPAMSDESIIVKDQ TIFLAGPPLVKAATGEVV+AE+
Sbjct: 181 NLSAKGIAQIAVVMGSCTAGGAYVPAMSDESIIVKDQATIFLAGPPLVKAATGEVVSAEE 240

Query: 237 LGGGDVHTRLSGVVDHLAQNDLHALSIARSIVGNLNRTKPQQLAMREIREPKYPARELYG 296
           LGGGDVHTRLSGV DHLAQ+D HAL+IAR+IVG+LNR KPQ LA+RE  EP+YPA+ELYG
Sbjct: 241 LGGGDVHTRLSGVADHLAQDDTHALAIARNIVGHLNRRKPQPLALRESIEPRYPAQELYG 300

Query: 297 VIPTDTRKPFDVREVIARVVDGSEFDEFKARYGTTLVCGFAHLYGMPVGIIANNGILFSE 356
           VIPTDTRKPFDVREVIAR+VD SEFDEFKARYGTTLVCGFAHL+GMPVGIIANNGILFSE
Sbjct: 301 VIPTDTRKPFDVREVIARIVDASEFDEFKARYGTTLVCGFAHLHGMPVGIIANNGILFSE 360

Query: 357 SALKGAHFIELCCQRKIPLIFLQNITGFMVGKKYENEGIARNGAKMVTAVSTAAVPKLTM 416
           +A KG HFIELCCQRKIPLIFLQNITGFMVGKKYENEGIAR+GAKMVTAVSTA VPKLT+
Sbjct: 361 AAEKGTHFIELCCQRKIPLIFLQNITGFMVGKKYENEGIARHGAKMVTAVSTAKVPKLTV 420

Query: 417 IIGGSFGAGNYGMCGRAFSPRFLWMWPNARISVMGGEQAASVLATVRRDGIESKGGSWTA 476
           IIGGSFGAGNYGMCGRAFSPRFLWMWPNARISVMGGEQAASVLATV+RDGIE++GGSW+A
Sbjct: 421 IIGGSFGAGNYGMCGRAFSPRFLWMWPNARISVMGGEQAASVLATVKRDGIEARGGSWSA 480

Query: 477 EEEAAFKTPIREQYEHQGHPYYASARLWDDGVIDPADTRTVLGLGLSAALNAPIEETKFG 536
           EEEAAFK PIR QYE QGHPYYASARLWDDGVIDPADTR VL LGLSAALNAPIEET+FG
Sbjct: 481 EEEAAFKEPIRAQYETQGHPYYASARLWDDGVIDPADTRQVLALGLSAALNAPIEETRFG 540

Query: 537 VFRM 540
           VFR+
Sbjct: 541 VFRI 544


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,780,267
Number of extensions: 79402
Number of successful extensions: 223
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 450
Effective length of database: 1,193,720
Effective search space: 537174000
Effective search space used: 537174000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)