BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0154.p (586 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313973|ref|YP_003778065.1| acetyl/propionyl-CoA carboxylas... 751 0.0 gi|300313399|ref|YP_003777491.1| acyl-CoA carboxylase biotin sub... 274 2e-74 gi|300313753|ref|YP_003777845.1| urea amidolyase [Herbaspirillum... 266 4e-72 gi|300309729|ref|YP_003773821.1| biotin carboxylase [Herbaspiril... 264 1e-71 >gi|300313973|ref|YP_003778065.1| acetyl/propionyl-CoA carboxylase subunit alpha [Herbaspirillum seropedicae SmR1] Length = 671 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/567 (71%), Positives = 458/567 (80%), Gaps = 12/567 (2%) Query: 20 NAMGSKSAAKALMEKANVPLVPGYHGDNQEADFLQKEADRISYPVLLKASAGGGGKGMRI 79 AMGSK+AAKALME+A VPLVPGYHG+ QE+ L +ADRI YPVLLKASAGGGGKGMR+ Sbjct: 111 EAMGSKAAAKALMEQAAVPLVPGYHGEEQESGLLHSQADRIGYPVLLKASAGGGGKGMRV 170 Query: 80 VEKSEDFKAALASCKREAINSFGDDKVLVERYLTRPRHIEIQVFADSRGECVYLFERDCS 139 VE+SEDF AALASCKREAI SFGDD+VLVE+YLTRPRHIEIQVFAD G CVYLFERDCS Sbjct: 171 VERSEDFDAALASCKREAIASFGDDRVLVEKYLTRPRHIEIQVFADGHGHCVYLFERDCS 230 Query: 140 VQRRHQKVLEEAPAPGMSEERRRAMGDAAVAAAKAVGYVGAGTVEFIADYSNGEDGSFYF 199 VQRRHQKVLEEAPAPGMSEERR AMG+AAVAAA+AVGYVGAGTVEFIA+ +DGSFYF Sbjct: 231 VQRRHQKVLEEAPAPGMSEERRAAMGEAAVAAARAVGYVGAGTVEFIAN----QDGSFYF 286 Query: 200 MEMNTRLQVEHPVTEMITGLDLVEWQLRVAAGENLPLRQEQLQLNGHAIEARIYAENPEK 259 MEMNTRLQVEHPVTEMITGLDLVEWQLRVAAG+ LPL+QEQL+++GHAIEARIYAENPEK Sbjct: 287 MEMNTRLQVEHPVTEMITGLDLVEWQLRVAAGQALPLKQEQLRIHGHAIEARIYAENPEK 346 Query: 260 GFLPAIGTLRYLHTPPAVHFRV-DSHVQTPAAVRIDSGVREGDAISPFYDPMIAKLIVWG 318 GFLPAIGTL + + AV FR+ S PA VRID+GVREGDAISPFYDPMIAKLIVWG Sbjct: 347 GFLPAIGTLTRMRSAAAVEFRLGQSAPGDPAHVRIDAGVREGDAISPFYDPMIAKLIVWG 406 Query: 319 KDRDAALANMAAALAQYRIVGLATNIGFLQRLVAGQAFSTADLDTGLIERNHDALFPTLQ 378 DRDAAL NM ALAQY++VGLATNI FLQRLVAGQAFSTA LDTGLIER+ D LFP Sbjct: 407 PDRDAALRNMQRALAQYQVVGLATNIAFLQRLVAGQAFSTAALDTGLIERHRDTLFPPPS 466 Query: 379 PASTATLALATSLLLAQEAGDAGDARDPWAQTSGWRMNGSLLRVLRFADEAGDAGEYRIG 438 T TLALA + +L QE A + DPW+Q +GWR+N LLR LRF +AGD + Sbjct: 467 SPDTETLALAIAAILQQEHAQA-ERSDPWSQRNGWRLNTRLLRTLRFEHDAGDT---TVQ 522 Query: 439 VEYRGD-QTWILHRDGAQHGLCFERQGDTDLRVTLDDNIVAGNVVRDGDIFHVFH-QGRH 496 ++Y GD Q W L +G H L L ++LD + +V+R+G+ HVF G+H Sbjct: 523 LDYAGDGQHWSLLTNGQTHALQLHAADGDTLIISLDGRTLRADVLREGEWLHVFDAHGQH 582 Query: 497 AVLTWDDPLAHAGHVESEGGRLTAPMPGKIVAVLVEKGHGVTKGAPLLIMEAMKMEHTIA 556 + L DPLAHAGH E+EGGRLTAPMPGKIVA+LV+KG V G PLLIMEAMKMEHTIA Sbjct: 583 S-LRHVDPLAHAGHSEAEGGRLTAPMPGKIVALLVQKGASVAHGTPLLIMEAMKMEHTIA 641 Query: 557 APADGVIDELLYAVGDQVTEGAQLLAF 583 APADGV+++LLYAVGDQV EGAQLL F Sbjct: 642 APADGVVEDLLYAVGDQVAEGAQLLEF 668 >gi|300313399|ref|YP_003777491.1| acyl-CoA carboxylase biotin subunit [Herbaspirillum seropedicae SmR1] Length = 462 Score = 274 bits (700), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 154/346 (44%), Positives = 217/346 (62%), Gaps = 16/346 (4%) Query: 22 MGSKSAAKALMEKANVPLVPGYHGDNQEADFLQKEADRISYPVLLKASAGGGGKGMRIVE 81 MG K+ A+ A VP+VPG G+ ++ AD I YP+L+KASAGGGG+G+R+ Sbjct: 116 MGDKAEARRTAAAAGVPVVPGSAGELEDLATALACADEIGYPLLIKASAGGGGRGIRMAR 175 Query: 82 KSEDFKAALASCKREAINSFGDDKVLVERYLTRPRHIEIQVFADSRGECVYLFERDCSVQ 141 + + + EA +FG V +ER++ R RHIE+Q+ D V+LFER+CS+Q Sbjct: 176 DATELAREFPLAQAEAQAAFGSAAVYLERFIRRARHIEVQILGDGE-RAVHLFERECSLQ 234 Query: 142 RRHQKVLEEAPAPGMSEERRRAMGDAAVAAAKAVGYVGAGTVEFIADYSNGEDGSFYFME 201 RR QKVLEEAP+P ++ +R+A+ D+AV A+ + Y GAGT+E++ D +GE F+F+E Sbjct: 235 RRRQKVLEEAPSPALTPAQRQALCDSAVRLAERLHYRGAGTLEYLFDDESGE---FFFIE 291 Query: 202 MNTRLQVEHPVTEMITGLDLVEWQLRVAAGENLPLRQEQLQLNGHAIEARIYAENPEKGF 261 MNTR+QVEHPVTEMITG+DLV+ LR+A GE L L+Q +++ G A+E RI AE+PE+ F Sbjct: 292 MNTRIQVEHPVTEMITGIDLVQAMLRIAGGEPLGLQQSDIRMQGAALEMRINAEDPERNF 351 Query: 262 LPAIGTLRYLHTPPAVHFRVDSHVQTPAAVRIDSGVREGDAISPFYDPMIAKLIVWGKDR 321 P GT+ L P RV+SH+ G I P+YD ++AKL+V GKDR Sbjct: 352 FPCPGTVAELQWPQGEGIRVESHLYA------------GYRIPPYYDSLLAKLVVHGKDR 399 Query: 322 DAALANMAAALAQYRIVGLATNIGFLQRLVAGQAFSTADLDTGLIE 367 A+A AA+ RI G+AT + Q L+A +A DTG +E Sbjct: 400 AQAIARAQAAVLATRITGMATTLSLHQWLLADARVQSARFDTGALE 445 >gi|300313753|ref|YP_003777845.1| urea amidolyase [Herbaspirillum seropedicae SmR1] Length = 1207 Score = 266 bits (680), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 157/356 (44%), Positives = 214/356 (60%), Gaps = 16/356 (4%) Query: 15 SSARXNAMGSKSAAKALMEKANVPLVPGYHGDNQEADFLQKEADRISYPVLLKASAGGGG 74 + A+ G K A+AL + VP++ G D L A R+ YPV+LK++AGGGG Sbjct: 106 TPAQLRIFGLKHTARALAREQGVPMLEGTDLLESIDDAL-AAASRVGYPVMLKSTAGGGG 164 Query: 75 KGMRIVEKSEDFKAALASCKREAINSFGDDKVLVERYLTRPRHIEIQVFADSRGECVYLF 134 GMR+ + A S +R N+F D V +E+Y+ R RH+E+QVF D RGE + L Sbjct: 165 IGMRVCRSDAELADAFDSVRRLGQNNFSDAGVFIEKYIERARHLEVQVFGDGRGEVIALG 224 Query: 135 ERDCSVQRRHQKVLEEAPAPGMSEERRRAMGDAAVAAAKAVGYVGAGTVEFIADYSNGED 194 RDCSVQRR+QKVLEE PAP + + A+ AA+ AKAV Y AGTVEF+ D G+ Sbjct: 225 VRDCSVQRRNQKVLEETPAPNLPDGMAEALCAAAIKLAKAVNYRSAGTVEFVYDSLAGQ- 283 Query: 195 GSFYFMEMNTRLQVEHPVTEMITGLDLVEWQLRVAAGENLPLRQ--EQLQLNGHAIEARI 252 FYF+E+NTRLQVEH VTE + G+DLV W + +AAG+ PL Q LQ GHAI+AR+ Sbjct: 284 --FYFLEVNTRLQVEHGVTEQVWGVDLVRWMIELAAGDLPPLAQLAAGLQPRGHAIQARL 341 Query: 253 YAENPEKGFLPAIGTLRYLHTPPAVHFRVDSHVQTPAAVRIDSGVREGDAISPFYDPMIA 312 YAE+P + F P G L + PP VD A+RID+ V G I+P++DPMIA Sbjct: 342 YAEDPGRQFQPCPGLLTAVDFPP-----VDGQ-----ALRIDTWVEAGCEIAPYFDPMIA 391 Query: 313 KLIVWGKDRDAALANMAAALAQYRIVGLATNIGFLQRLVAGQAFSTADLDTGLIER 368 KLI W R+AA + AAL + G+ TN +L++++A F++ T +E+ Sbjct: 392 KLISWQPTREAARLALDAALRATLLYGVETNQHYLRQILADVPFASGQPWTRCLEQ 447 >gi|300309729|ref|YP_003773821.1| biotin carboxylase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 264 bits (675), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 152/338 (44%), Positives = 210/338 (62%), Gaps = 23/338 (6%) Query: 22 MGSKSAAKALMEKANVPLVPGYHG---DNQEADFLQKEADRISYPVLLKASAGGGGKGMR 78 MG K +AK M +A VP VPG G DN + + + A +I YPV++KA+ GGGG+GMR Sbjct: 113 MGDKVSAKQAMIRAGVPCVPGSDGALPDNPKE--IVQIARKIGYPVIIKAAGGGGGRGMR 170 Query: 79 IVEKSEDFKAALASCKREAINSFGDDKVLVERYLTRPRHIEIQVFADSRGECVYLFERDC 138 +V A+ K EA +FG+ +V +E+YL PRH+EIQ+ AD + ++L ERDC Sbjct: 171 VVHTEAALINAVTMTKTEAGAAFGNPEVYMEKYLENPRHVEIQILADEHKQAIWLGERDC 230 Query: 139 SVQRRHQKVLEEAPAPGMSEERRRAMGDAAVAAAKAVGYVGAGTVEFIADYSNGEDGSFY 198 S+QRRHQKV+EEAPAPG+ + +G+ A + + Y GAGT EF+ Y N E FY Sbjct: 231 SMQRRHQKVIEEAPAPGIPRKIIEKIGERCAEACRKMNYRGAGTFEFL--YENEE---FY 285 Query: 199 FMEMNTRLQVEHPVTEMITGLDLVEWQLRVAAGENLPLRQEQLQLNGHAIEARIYAENPE 258 F+EMNTR+QVEHPVTEMITG+D+V+ Q+R+AAGE L RQ ++L GHAIE RI AE+P Sbjct: 286 FIEMNTRVQVEHPVTEMITGVDIVQEQIRIAAGEKLRYRQRDIELKGHAIECRINAEDPF 345 Query: 259 KGFLPAIGTLRYLHTPPAVHFRVDSHVQTPAAVRIDSGVREGDAISPFYDPMIAKLIVWG 318 K F+P+ G + H P RVDSH + G + P YD M+ K+I +G Sbjct: 346 K-FIPSPGRITAWHVPGGPGIRVDSHAYS------------GYFVPPNYDSMVGKVIAYG 392 Query: 319 KDRDAALANMAAALAQYRIVGLATNIGFLQRLVAGQAF 356 R+ A+ M AL++ + G++TNI + L+ F Sbjct: 393 ATREQAIRRMQIALSEMVVEGISTNIPLHRELMVDARF 430 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,795,295 Number of extensions: 73642 Number of successful extensions: 264 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 250 Number of HSP's successfully gapped: 4 Length of query: 586 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 496 Effective length of database: 1,193,720 Effective search space: 592085120 Effective search space used: 592085120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)