BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0153.p
         (311 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313974|ref|YP_003778066.1| beta-lactamase [Herbaspirillum ...   413   e-116

>gi|300313974|ref|YP_003778066.1| beta-lactamase [Herbaspirillum
           seropedicae SmR1]
          Length = 309

 Score =  413 bits (1061), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/309 (64%), Positives = 241/309 (77%), Gaps = 1/309 (0%)

Query: 1   MRAHPYGLPSSVYVLERGWLSSNNVLFLGTQETALVDTGYVTHAAQTLALVDHVLKERGR 60
           M A    + +S++VLERGWLSSNNVL  G  E A++D+GYVTHA QT  LV HVL +RGR
Sbjct: 1   MNAPALHIAASIHVLERGWLSSNNVLLFGRDEVAMIDSGYVTHAEQTRTLVRHVLAQRGR 60

Query: 61  APRLDRVINTHLHSDHCGGNAALQARYGCRTSIPHAEADKVTRWDEDALSYRATGQQCPR 120
            PRLD ++NTHLHSDHCGGNAALQ  + CR +IP AE +KV  WDEDALSYRATGQ+C R
Sbjct: 61  -PRLDLLVNTHLHSDHCGGNAALQQEHHCRIAIPAAEEEKVRHWDEDALSYRATGQRCAR 119

Query: 121 FRFDDTLRDGDTLVLGDLEWTALAAPGHDPHSLILHCAQEGILISADALWQNGFGVIFPE 180
           F    TLR G+ L +G+L+W  LAAPGHDPH+L+ +CAQEG+L+SADALW+NGFG+IFPE
Sbjct: 120 FTATQTLRSGEVLRMGELDWQVLAAPGHDPHALLFYCAQEGVLVSADALWRNGFGIIFPE 179

Query: 181 LEGESGFAEERATLDLIAGLDVRVVIPGHGAPFTDVKRALATAYSRLDYLQADSMRNAQN 240
           L+G+SGFAE RATL+LI  L+VR VIPGHGAPFT+V  AL  A+SRLDYLQAD  RNA N
Sbjct: 180 LDGQSGFAEARATLELIRSLEVRTVIPGHGAPFTEVDDALEKAFSRLDYLQADPRRNAHN 239

Query: 241 CVKVMLKFLLLERQAISLPEVAAMMAGIPLLALCNRRYFHLSDDALAEWASAQLIKAGAA 300
            +KV++KFLL+ER  I+L ++ AMM  IPLL + N R+  + D ALA W  AQL KAGAA
Sbjct: 240 GIKVLVKFLLMERGRIALEQLPAMMREIPLLRITNERHLQMDDLALARWCVAQLEKAGAA 299

Query: 301 SSDGVSLLN 309
            SDGV LL+
Sbjct: 300 QSDGVFLLD 308


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,056,049
Number of extensions: 45415
Number of successful extensions: 141
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,217,395
Effective search space: 275131270
Effective search space used: 275131270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)