BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0149.p (589 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310634|ref|YP_003774726.1| methyl-accepting chemotaxis dom... 511 e-146 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 382 e-107 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 380 e-106 gi|300310583|ref|YP_003774675.1| methyl-accepting chemotaxis I (... 374 e-104 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 370 e-103 >gi|300310634|ref|YP_003774726.1| methyl-accepting chemotaxis domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 568 Score = 511 bits (1317), Expect = e-146, Method: Compositional matrix adjust. Identities = 280/551 (50%), Positives = 379/551 (68%), Gaps = 26/551 (4%) Query: 5 FTLKRSFFFF--IILAALSLLMFGALQMILRAQHEIERAGDSRYDSYKLANEVRNNSEHL 62 F++++ F +I ++L++ AL + R + A +SRY S+ LA E+R +S+ L Sbjct: 9 FSIRQIFIMLTAVITVLMTLIVLAALA-VDRYDARLNAANESRYASFLLATELRQSSDDL 67 Query: 63 TQSVRSYVVTGDPRFET---------------------VYWDIVAVSSGKKPRAD-GRTM 100 T+ R+YVVTGDP +E +YWD VA + GK PR D + + Sbjct: 68 TRLARTYVVTGDPSYEQQYEAILDIRNGKKARPEHYGRIYWDFVA-ADGKAPRPDSNQHV 126 Query: 101 PITDLMKQAGFTDQEFARLNEAQSLSTALIKTEEVAMHMVKGEYDDGTGKFTRKDAPDLE 160 +TDLM+ AGFT E +L EA++ S AL+KTE +AM+MVKG Y D G FT++ PDL Sbjct: 127 ALTDLMRAAGFTAAEMGKLEEAKNNSDALVKTEVIAMNMVKGLYADAQGNFTKRADPDLA 186 Query: 161 KARKLVHDDVYEKNAASIMRPINEFEKLMDQRTRGELDKARRDGSIAYAVGLAMLGVMLA 220 +AR+L+H+ Y A IMRP++EF L+D RT +++ AR + + +++ + L Sbjct: 187 QARELMHNHAYHVYKAKIMRPVDEFFALLDARTTEQVESARAQATHMATLFYSLIAIALV 246 Query: 221 ISVAVLYALYVLIKKQLDKSLAVAERLATGDLTAELEVERDDEIGRLMGAINGIGHGLAS 280 + L +Y I+ L + +VA R+A GDLTA+++ E G L+ A+ + GL + Sbjct: 247 VLACTLMLVYHAIRNPLAHAASVARRVAHGDLTAQIDPAIKGETGELLEALTIMQSGLQT 306 Query: 281 VVGNVRTGTETINVASREIATGNADLSNRTESQASSLEETASSMEELTSTVRQNADNARQ 340 +V +VR G + IN ++ EIA+G DLS+RTE QASSLEETASSMEELTSTV+QNA NAR Sbjct: 307 IVLDVRNGAQYINTSANEIASGTLDLSSRTEQQASSLEETASSMEELTSTVKQNAGNARL 366 Query: 341 ANSLVTSASELAVKGGKVVGDVVHTMGSIKESSSKIVDIISVIDGIAFQTNILALNAAVE 400 A+ L +AS +AV+GG+VV VV TMG+I ESS +IVDII+VIDGIAFQTNILALNAAVE Sbjct: 367 ASELANTASGVAVRGGEVVARVVDTMGAINESSKRIVDIIAVIDGIAFQTNILALNAAVE 426 Query: 401 AARAGEQGRGFAVVASEVRSLAQRSASAAKEIKELISDSVGKVDAGGKLVDEAGATMGEI 460 AARAGEQGRGFAVVA+EVRSLAQRSA+AAKEIK LI +SV KV+AG LV+EAG+TM E+ Sbjct: 427 AARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKTLIDNSVSKVEAGSTLVNEAGSTMREV 486 Query: 461 VTSVKHVADIMGEITAASQEQSTGIEEVNRAITQMDEITQQNAALVEQAAAAAESLQEQA 520 V SV+ V +I+ I+ ASQEQ++GIE++ +AI QMD++TQQNAALVEQA+AA+ES+Q QA Sbjct: 487 VESVQRVTEIITGISNASQEQASGIEQIQQAINQMDQVTQQNAALVEQASAASESMQMQA 546 Query: 521 DLLAKAVSVFK 531 L V FK Sbjct: 547 HKLTDLVGAFK 557 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 382 bits (982), Expect = e-107, Method: Compositional matrix adjust. Identities = 231/376 (61%), Positives = 288/376 (76%), Gaps = 7/376 (1%) Query: 160 EKARKLVHDDVYEKNAASIMRPINEFEKLMD---QRTRGELDKARRDGSIAYAVGLAMLG 216 E+AR L D K S++ ++E K+ D +R+ ++ R ++ + +GL Sbjct: 143 EEARALFKGD-SNKTFRSMIENMDEIIKVNDAGSKRSDDMAEQVYRSATL-WIIGLLAAI 200 Query: 217 VMLAISVAVLYALYVLIKKQLDKSLAVAERLATGDLTAELEVERDDEIGRLMGAINGIGH 276 V++A+ +AV+ A V + L++++AVAER+A GDLT ++ DE G LM ++ + Sbjct: 201 VVIALGLAVMVARAV--SRPLNEAVAVAERVAQGDLTMDIRATSTDETGMLMHSLRAMND 258 Query: 277 GLASVVGNVRTGTETINVASREIATGNADLSNRTESQASSLEETASSMEELTSTVRQNAD 336 L +VG VRTGT+TI AS+EIATGN DLS+RTE QA SLEETAS+MEELT+TV+QNAD Sbjct: 259 SLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGSLEETASAMEELTATVKQNAD 318 Query: 337 NARQANSLVTSASELAVKGGKVVGDVVHTMGSIKESSSKIVDIISVIDGIAFQTNILALN 396 NARQAN L SAS++A +GG VVG VV TM I ESS++I DIISVIDGIAFQTNILALN Sbjct: 319 NARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRIADIISVIDGIAFQTNILALN 378 Query: 397 AAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKELISDSVGKVDAGGKLVDEAGAT 456 AAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIK+LI DSV KV AG +LV+ AGAT Sbjct: 379 AAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVEKVGAGSQLVERAGAT 438 Query: 457 MGEIVTSVKHVADIMGEITAASQEQSTGIEEVNRAITQMDEITQQNAALVEQAAAAAESL 516 M E+V SV+ V D++ EI+AAS EQSTGIEE+NRAITQMDE+TQQNAALVE+AAAAA+SL Sbjct: 439 MSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDEVTQQNAALVEEAAAAAQSL 498 Query: 517 QEQADLLAKAVSVFKL 532 Q+QA L++ VSVFKL Sbjct: 499 QDQAARLSQVVSVFKL 514 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 380 bits (977), Expect = e-106, Method: Compositional matrix adjust. Identities = 226/366 (61%), Positives = 276/366 (75%), Gaps = 9/366 (2%) Query: 185 FEKLMDQRTRGELDKARRDGSIAYAVGLA--MLGVMLAISVAVLYALYVLIKKQLDKSLA 242 F D + + E KA DG++A V LA M V+ AI + L A ++ K L +++ Sbjct: 169 FADSQDAQLQAEGAKAVADGAMAIEVTLACSMAAVLAAIILGYLMARSIV--KPLTEAVR 226 Query: 243 VAERLATGDLTAELEVERDDEIGRLMGAINGIGHGLASVVGNVRTGTETINVASREIATG 302 VAE +A GDLT +E DE G+LM A+ + L +V VR GTE+I AS EIA+G Sbjct: 227 VAENVAAGDLTTRIEPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASG 286 Query: 303 NADLSNRTESQASSLEETASSMEELTSTVRQNADNARQANSLVTSASELAVKGGKVVGDV 362 N DLS RTE QA SLEETAS+MEE+TSTVRQNADNARQAN + SASE+A++GG++VG V Sbjct: 287 NLDLSARTEQQAGSLEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRV 346 Query: 363 VHTMGSIKESSSKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA 422 VHTM I +SS KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLA Sbjct: 347 VHTMDEINQSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLA 406 Query: 423 QRSASAAKEIKELISDSVGKVDAGGKLVDEAGATMGEIVTSVKHVADIMGEITAASQEQS 482 QRSA+AAKEIK LI+DSVGKV+ G LV +AGATM ++V+SV+ V DI+ EI+AAS EQS Sbjct: 407 QRSAAAAKEIKALIADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQS 466 Query: 483 TGIEEVNRAITQMDEITQQNAALVEQAAAAAESLQEQADLLAKAVSVFKLSGTDHGHGHV 542 +GIEE+NRA+TQMDE TQQNAALVEQAAAAA+S+QEQA L +++S+FKL + G + Sbjct: 467 SGIEEINRAVTQMDEGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKL---EQGAASI 523 Query: 543 Q--PVR 546 PVR Sbjct: 524 PAAPVR 529 >gi|300310583|ref|YP_003774675.1| methyl-accepting chemotaxis I (serine chemoreceptor) transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 574 Score = 374 bits (960), Expect = e-104, Method: Compositional matrix adjust. Identities = 231/324 (71%), Positives = 264/324 (81%), Gaps = 1/324 (0%) Query: 210 VGLAMLGVM-LAISVAVLYALYVLIKKQLDKSLAVAERLATGDLTAELEVERDDEIGRLM 268 +G+ ++GV+ L + + + I L ++ +AE ++ GDLT + DE ++ Sbjct: 189 IGMLLMGVLTLGLGFFFTFVITRSIVGPLKRAGNIAETISRGDLTQDFHDHGRDEAATMV 248 Query: 269 GAINGIGHGLASVVGNVRTGTETINVASREIATGNADLSNRTESQASSLEETASSMEELT 328 A+ + LA+ + V+ I VAS EIA GN DLSNRTESQASSLEETASSME+LT Sbjct: 249 NALEAMQTNLAATLNEVKESAAVIAVASHEIARGNVDLSNRTESQASSLEETASSMEQLT 308 Query: 329 STVRQNADNARQANSLVTSASELAVKGGKVVGDVVHTMGSIKESSSKIVDIISVIDGIAF 388 STV+QNA+NARQAN LV SAS+ A KGG+VVGDVV TMGSIKESSSKIVDII VIDGIAF Sbjct: 309 STVQQNAENARQANQLVVSASDYATKGGRVVGDVVATMGSIKESSSKIVDIIGVIDGIAF 368 Query: 389 QTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKELISDSVGKVDAGGK 448 QTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LISDSV KVDAGGK Sbjct: 369 QTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKGLISDSVEKVDAGGK 428 Query: 449 LVDEAGATMGEIVTSVKHVADIMGEITAASQEQSTGIEEVNRAITQMDEITQQNAALVEQ 508 LVDEAGATM EIVTSVKHVADIMGEITAASQEQS GI EVN AITQ+DEITQQNAALVEQ Sbjct: 429 LVDEAGATMSEIVTSVKHVADIMGEITAASQEQSAGIAEVNHAITQIDEITQQNAALVEQ 488 Query: 509 AAAAAESLQEQADLLAKAVSVFKL 532 AAAAAESLQEQAD+LA+AV+VF+L Sbjct: 489 AAAAAESLQEQADVLARAVAVFRL 512 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 370 bits (950), Expect = e-103, Method: Compositional matrix adjust. Identities = 230/380 (60%), Positives = 278/380 (73%), Gaps = 4/380 (1%) Query: 182 INEFEKLMDQRTRG-ELDKARRDGSIAYAVGLAMLGVMLAISVAVLYALYV--LIKKQLD 238 + + +KL +G ++ + D A A ++ V I +A+L A++V LI + L+ Sbjct: 161 LQQIDKLAAVNDKGADISNKQADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLE 220 Query: 239 KSLAVAERLATGDLTAELEVERDDEIGRLMGAINGIGHGLASVVGNVRTGTETINVASRE 298 ++++VA+R+A GDLT +E DE G+L+ A+ + L +VG VR GT+TI AS E Sbjct: 221 EAVSVAQRVAGGDLTTRIEPAGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTE 280 Query: 299 IATGNADLSNRTESQASSLEETASSMEELTSTVRQNADNARQANSLVTSASELAVKGGKV 358 IA+GN DLS+RTE QASSLEETAS+MEELTSTV+QNADNARQAN L SASE+A +GG V Sbjct: 281 IASGNLDLSSRTEEQASSLEETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAV 340 Query: 359 VGDVVHTMGSIKESSSKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV 418 V VV TMGSI SS KI DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV Sbjct: 341 VNQVVDTMGSINASSRKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV 400 Query: 419 RSLAQRSASAAKEIKELISDSVGKVDAGGKLVDEAGATMGEIVTSVKHVADIMGEITAAS 478 RSLAQRSA AAKEIKELI SV +VD G KLV+ AG TM E+V SV+ V DI+GEI++AS Sbjct: 401 RSLAQRSAGAAKEIKELIEGSVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSAS 460 Query: 479 QEQSTGIEEVNRAITQMDEITQQNAALVEQAAAAAESLQEQADLLAKAVSVFKLSGTDHG 538 QEQS GIE+VN AI QMDE+TQQNAALVE+AAAAA+SLQEQA+ L + V FKL Sbjct: 461 QEQSEGIEQVNLAIAQMDEVTQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKLEQQPDE 520 Query: 539 HGHVQPVRHSAPVAAAAKVR 558 PVR +A VA A VR Sbjct: 521 PASRPPVR-AASVARTAAVR 539 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.128 0.343 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,299,742 Number of extensions: 46125 Number of successful extensions: 604 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 305 Number of HSP's successfully gapped: 72 Length of query: 589 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 498 Effective length of database: 1,188,985 Effective search space: 592114530 Effective search space used: 592114530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)