BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0142.p
         (248 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313979|ref|YP_003778071.1| major facilitator superfamily p...   283   7e-78
gi|300310361|ref|YP_003774453.1| major facilitator superfamily p...    80   1e-16

>gi|300313979|ref|YP_003778071.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 400

 Score =  283 bits (725), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 152/224 (67%), Positives = 183/224 (81%)

Query: 1   MLGLLYASWAARIPSIRDNLQLDAATLSMVLLCGGIGAVGSFPLAAWLNAHYGARRTTWY 60
           +LG+++++WAARIP+IRD LQLDAATL++VLLCGGIGAVGSFPLAAW+  HYGAR ++ Y
Sbjct: 43  LLGVVFSTWAARIPAIRDQLQLDAATLALVLLCGGIGAVGSFPLAAWITGHYGARHSSLY 102

Query: 61  AGLVLLLTLPALGIAPNLALLMLFSAIYGAASSCFDVAINALGAVAEKQAGRSIMSLLHA 120
           AGLVLLL+LP L +AP L  LM    +YGAASSCFDVAINALGA AE++AGR IMS+LH 
Sbjct: 103 AGLVLLLSLPLLALAPGLWTLMAVCTLYGAASSCFDVAINALGAQAEREAGRPIMSMLHG 162

Query: 121 WFCVGTFSGALLGSAVAALEVAPFWHFLALAVLFLLPLRLGYKAMPNDRPEPSADKKIFA 180
           WFCVGTFSGAL+ SAVA L VAP WHFL  A L   PL  G +A+P+DRP+    +++FA
Sbjct: 163 WFCVGTFSGALVASAVAGLGVAPLWHFLLAAALLAWPLYAGCQALPDDRPQYDPQRQLFA 222

Query: 181 IPHGHLVALGLIGFCGAIVEGSIADWSGLYMKDHMNAGDGGARL 224
           +PHGHLV LG+I FCGAIVEGS+ADWSG+YMKDH+ A DG   L
Sbjct: 223 LPHGHLVVLGVIAFCGAIVEGSVADWSGIYMKDHIGASDGATPL 266


>gi|300310361|ref|YP_003774453.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 390

 Score = 80.5 bits (197), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 109/219 (49%), Gaps = 17/219 (7%)

Query: 3   GLLYASWAARIPSIRDNLQLDAATLSMVLLCGGIGAVGSFPLAAWLNAHYGARRTTWYAG 62
           G  +A+W   IPS+++   L  A LS+ +L    GA+ +   +    A  G+ R     G
Sbjct: 31  GATFATWGVLIPSVKERFALSDAVLSLAMLAVAGGALLTMGQSGKWIARVGSARALRQVG 90

Query: 63  LVLLLTLPALGIAPNLALLMLFSAIYGAASSCFDVAINALGAVAEKQAGRSIMSLLHAWF 122
           ++   TL  + +AP   +L+L   ++G+A + FDVA++   A+ E Q  R IMS LHA F
Sbjct: 91  ILYAATLLLIPLAPQFWMLVLLLLVFGSAMAAFDVAMSVQAALVEGQRTRPIMSTLHAMF 150

Query: 123 CVGTFSGALLGSAVAALEVAPFWHFLALAVLFL-LPLRLGYKAMPNDRPEPSADKKIFAI 181
              +  G    +  A   ++P  H   + V+ L + L +G  A+P++  + +A       
Sbjct: 151 ---SIGGIAGAALGAVPGLSPLAHAALVGVVTLAVSLSIGPFALPDEVHDSAAT------ 201

Query: 182 PHG-------HLVALGLIGFCGAIVEGSIADWSGLYMKD 213
           PHG        ++ LG I F   + EG + DW+ +YM+D
Sbjct: 202 PHGADKRARRMVLVLGGIAFLALMCEGGMYDWAAVYMRD 240


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.140    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 731,627
Number of extensions: 27400
Number of successful extensions: 148
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 2
Length of query: 248
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,226,865
Effective search space: 202432725
Effective search space used: 202432725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)