BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0138.p
         (108 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310408|ref|YP_003774500.1| LysR family transcription regul...   103   3e-24
gi|300309660|ref|YP_003773752.1| LysR family transcription regul...    82   7e-18
gi|300309921|ref|YP_003774013.1| LysR family transcription regul...    80   4e-17
gi|300312334|ref|YP_003776426.1| transcription regulator protein...    79   8e-17
gi|300313922|ref|YP_003778014.1| LysR family transcription regul...    77   3e-16

>gi|300310408|ref|YP_003774500.1| LysR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 296

 Score =  103 bits (257), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 49/94 (52%), Positives = 64/94 (68%)

Query: 14  GAHGAVRGRLVVTASAMFGRMYVTPIVLEYLRRYPEAEVECRFADRIINLMDEGIDVAIR 73
           G +    G L VTA+ +FG+M+V PIV EYL  YP       F DR +N+++EG+DVA+R
Sbjct: 85  GHYDQPSGTLSVTAALLFGQMHVLPIVTEYLDLYPGMRARTFFIDRPVNIVEEGMDVAVR 144

Query: 74  IGQLADSSYQAIPVGTVRRVVCASPSYLAEHGAP 107
           IG L DS + AI VG+VRRV+CA+P YL  HG P
Sbjct: 145 IGHLPDSGFTAIQVGSVRRVICAAPDYLRRHGVP 178


>gi|300309660|ref|YP_003773752.1| LysR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 337

 Score = 82.4 bits (202), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 61/107 (57%)

Query: 1   VLADVSEMEDLAAGAHGAVRGRLVVTASAMFGRMYVTPIVLEYLRRYPEAEVECRFADRI 60
           +LAD+ E E          +GRL +   A  GR+ + P + ++  RYP+ E+     DR 
Sbjct: 72  ILADLDETEQSFRNVTRGPQGRLRIDVPASVGRLMLLPNLCDFYTRYPDIELMMGMGDRP 131

Query: 61  INLMDEGIDVAIRIGQLADSSYQAIPVGTVRRVVCASPSYLAEHGAP 107
           ++L+ E +D  IRIG+L DSS  A  +GT + V CA+P+YL  HG P
Sbjct: 132 VDLVQEAVDCVIRIGELQDSSMVARRIGTFQTVTCAAPAYLERHGVP 178


>gi|300309921|ref|YP_003774013.1| LysR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 299

 Score = 80.1 bits (196), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 64/107 (59%)

Query: 1   VLADVSEMEDLAAGAHGAVRGRLVVTASAMFGRMYVTPIVLEYLRRYPEAEVECRFADRI 60
           ++A + E +DL +       G L + A   FG +++ P+   +L R+PE  ++   +DRI
Sbjct: 72  IVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPEISLDITLSDRI 131

Query: 61  INLMDEGIDVAIRIGQLADSSYQAIPVGTVRRVVCASPSYLAEHGAP 107
           ++++DEG D+AIRI +L+DS+     + +    VCASP+YL  HG P
Sbjct: 132 VDIIDEGYDMAIRIARLSDSTLVHRKLTSTSLHVCASPAYLDAHGTP 178


>gi|300312334|ref|YP_003776426.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 302

 Score = 79.0 bits (193), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 63/107 (58%)

Query: 1   VLADVSEMEDLAAGAHGAVRGRLVVTASAMFGRMYVTPIVLEYLRRYPEAEVECRFADRI 60
           +LAD+ + E   +       G+L+++A A FGR +V P++  +L  + +  +     DRI
Sbjct: 72  ILADLEDAESAVSERSARASGQLLISAPAGFGRQHVAPLLPSFLAEHRDVTLTLNLNDRI 131

Query: 61  INLMDEGIDVAIRIGQLADSSYQAIPVGTVRRVVCASPSYLAEHGAP 107
            +++ EGIDVAIRI  L DS+  ++ +    RV+ A+P+YL  HG P
Sbjct: 132 ADVIGEGIDVAIRIATLTDSNLVSVKLAENHRVIVAAPAYLRRHGTP 178


>gi|300313922|ref|YP_003778014.1| LysR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 308

 Score = 77.0 bits (188), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 54/88 (61%)

Query: 20  RGRLVVTASAMFGRMYVTPIVLEYLRRYPEAEVECRFADRIINLMDEGIDVAIRIGQLAD 79
           RG L +TAS  F +  +   V+EY RRYP   V+    DR +NL++E ID+AIR+    +
Sbjct: 91  RGLLRITASTSFAQTQLIQAVVEYGRRYPGVAVDLLALDRTVNLVEERIDLAIRMTNRLE 150

Query: 80  SSYQAIPVGTVRRVVCASPSYLAEHGAP 107
            +  A P+G  R ++CA+P YLA HG P
Sbjct: 151 PNLIARPLGVCRSIICATPDYLARHGLP 178


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 335,896
Number of extensions: 12333
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 24
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 24
Length of query: 108
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 36
Effective length of database: 1,278,950
Effective search space: 46042200
Effective search space used: 46042200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 124 (52.4 bits)