BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0136.p
         (425 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310407|ref|YP_003774499.1| pyridoxamine 5'-phosphate oxida...   313   2e-86

>gi|300310407|ref|YP_003774499.1| pyridoxamine 5'-phosphate
           oxidase-like, FMN-binding protein [Herbaspirillum
           seropedicae SmR1]
          Length = 321

 Score =  313 bits (801), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 169/311 (54%), Positives = 222/311 (71%), Gaps = 10/311 (3%)

Query: 1   MQRSVGVVERMAGPGRNQMSRTRMPDQHREFYAQLPFVILGAVDTEGEVWATLRAGRPGF 60
           +Q  +GV ++M   G+ ++ RT MPDQHR+FY QLPF++LG+VD  G+ WATL  G+PGF
Sbjct: 17  LQAQLGVADKMQALGQ-RVVRTVMPDQHRDFYRQLPFIVLGSVDPVGDAWATLLEGQPGF 75

Query: 61  MHADVAKKLTLELVRDPLDPADAGMEDGDGIGMLGIELHTRRRNRMNGLVSRQSGERFHI 120
           + +    +L +     P DPA AGM  G  +G+LGIE+HTRRRNRMNG+++    + + +
Sbjct: 76  LTSPSPVQLDMHAHPAPADPAAAGMAAGAPVGLLGIEMHTRRRNRMNGVLAELE-QGWRV 134

Query: 121 DVTQAYGNCPQYIRLRQYEFTDAPA----GPVSKLAALDADAAAMIRAADSFYVASYVVR 176
            V Q++GNCP+YI+LR Y F   PA    G    LA LDA A  +I  AD+F+VA+Y   
Sbjct: 135 QVEQSFGNCPRYIQLRDYSFARDPAQDHPGQPELLATLDASARELIGMADAFFVATYADV 194

Query: 177 DGKKQVDASHRGGKPGFVRIDDDGVLTIPDFSGNLFFNTLGNFLLNPRAGLVFVDFRNGD 236
           D ++QVD SHRGGK GFVR+D +GVLT+PDF+GNLFF+TLGN +LN RAGL+FVD+ NGD
Sbjct: 195 DERRQVDVSHRGGKAGFVRVDAEGVLTVPDFNGNLFFSTLGNIVLNGRAGLLFVDYANGD 254

Query: 237 LLQLSGRAEVILDAPEVAAFVGAERMWRFTPQQIVRRPAALPLRWIDVAVGADSGASPNA 296
           +LQ+SG+AE+ILD+PE+AAF GAER+W F PQ+IVRR AAL LRW       + G SP  
Sbjct: 255 VLQMSGQAELILDSPEIAAFEGAERLWTFRPQRIVRRRAALALRW----RFQEQGWSPYV 310

Query: 297 LITGSWEDAAA 307
           L TG W  AAA
Sbjct: 311 LATGQWPRAAA 321


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.136    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,235,817
Number of extensions: 51557
Number of successful extensions: 200
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 337
Effective length of database: 1,203,190
Effective search space: 405475030
Effective search space used: 405475030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)