BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0135.p
         (227 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313278|ref|YP_003777370.1| vanillate O-demethylase (vanill...    70   2e-13
gi|300313415|ref|YP_003777507.1| phenylacetic acid degradation N...    56   2e-09

>gi|300313278|ref|YP_003777370.1| vanillate O-demethylase (vanillate
           degradation ferredoxin-like) oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 318

 Score = 70.1 bits (170), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 92/192 (47%), Gaps = 28/192 (14%)

Query: 27  ARSKAELAFGEEIAALVNAAKGGARHVRVVSQPDDDVEVSGRIDI-ALLKQMLPFDDYDF 85
           ARS A  AF E IAA   AA       RVV   DD  E + ++D+ ALL Q  P      
Sbjct: 140 ARSPARQAFRERIAASGFAA-------RVVHHYDDG-EAAQKLDLDALLAQADPATH--L 189

Query: 86  YLCGPAAFMQQMYDGLRAMNVIDARIHAEAFGPSGLQRQIDAQAEQVPLKPASADTVPVL 145
           Y+CGPA F+  + D  RA    +A++H E FG +             P+K A  +    +
Sbjct: 190 YVCGPAGFIAHVVDTARARGWPEAQVHFEYFGAA-------------PVK-ADGNGAFEV 235

Query: 146 FMRSAKEARWTSDSGSLLELAEQRGLNPESSCRDGRCGTCRTRVLQGEVTY---VKTPEF 202
            + S+ +        +++++  + G++   SC  G CGTC TRVL+GE  +     T E 
Sbjct: 236 KLASSGQVYTIPPERTVIQVLCEHGVDVPVSCEQGICGTCLTRVLEGEPDHRDQYLTDEE 295

Query: 203 AVADDEALICCA 214
             A+D+   CC+
Sbjct: 296 RAANDQFTPCCS 307


>gi|300313415|ref|YP_003777507.1| phenylacetic acid degradation NADH
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score = 56.2 bits (134), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 13/205 (6%)

Query: 23  LFQSARSKAELAFGEEIAALVNAAKGGARHVRVVSQPDDDVEV-SGRID----IALLKQM 77
           L  + R+ + + F EE+  L +A       V V+S+   DVE+ +GRID     A     
Sbjct: 145 LVYANRASSSVIFKEELTDLKDAYLERFNVVYVMSREQQDVELFNGRIDRAKCDAFFASW 204

Query: 78  LPFDDYDF-YLCGPAAFMQQMYDGLRAMNVIDARIHAEAFGPSGLQRQIDAQAEQVPLKP 136
           +   D D  +LCGP   +Q +   L+A  +   +I  E F  S   R   A A +  +  
Sbjct: 205 IDLKDVDAAFLCGPEEMVQAVAASLQAHGLPKTQIKTELFAASTPPR---AHAARTVVGK 261

Query: 137 ASADTVPVLFMRSAKEARWTSDSGSLLELAEQRGLNPESSCRDGRCGTCRTRVLQGEV-- 194
              + V V+            +  S+LE   + G++   SC+ G C TCR +V++G+V  
Sbjct: 262 QECE-VTVIVDGYHNVFTMDKEKESVLEAGLKHGIDLRYSCKGGVCATCRCKVVEGKVDM 320

Query: 195 -TYVKTPEFAVADDEALICCALPAA 218
                  ++ +A    L C + P +
Sbjct: 321 DANYALEDYEIARGFVLSCQSFPVS 345


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 689,748
Number of extensions: 26484
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 2
Length of query: 227
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 145
Effective length of database: 1,231,600
Effective search space: 178582000
Effective search space used: 178582000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)