BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0134.p (355 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313983|ref|YP_003778075.1| histidinol-phosphate aminotrans... 565 e-162 gi|300313353|ref|YP_003777445.1| histidinol-phosphate aminotrans... 124 2e-29 gi|300311875|ref|YP_003775967.1| aspartate/tyrosine/aromatic ami... 72 9e-14 >gi|300313983|ref|YP_003778075.1| histidinol-phosphate aminotransferase 1 protein [Herbaspirillum seropedicae SmR1] Length = 360 Score = 565 bits (1455), Expect = e-162, Method: Compositional matrix adjust. Identities = 280/357 (78%), Positives = 313/357 (87%), Gaps = 3/357 (0%) Query: 1 MSKFWSPIVSRLTPYTPGEQPKISKLVKLNTNENPYGPSPKAIAAMVQEIGDSLRLYPNP 60 MSKFWSPIVSRLTPYTPGEQPKI++LVKLNTNE+PYGPSP A+ A+ +E+ DSLRLYPNP Sbjct: 1 MSKFWSPIVSRLTPYTPGEQPKIARLVKLNTNESPYGPSPLALQAIAREVSDSLRLYPNP 60 Query: 61 DAEPLKLAIAKRH---GLSPAQVFVGNGSDEVLAHAFQALLKHGAPILFPDITYSFYPTY 117 DAEPLK AIA+RH G+S +VFVGNGSDEVLAHAF ALL+HG PILFPDITYSFYPTY Sbjct: 61 DAEPLKQAIARRHAADGVSVREVFVGNGSDEVLAHAFHALLQHGKPILFPDITYSFYPTY 120 Query: 118 ASLYEVEYRAVPLAGDFTIRVDDYLGQGEAIGGIIFPNPNAPTGCLLALDEVERLLAGNP 177 A LY+VEYRAVPLA DFT+R +DYLG G+AIGGIIFPNPNAPTGCLL L +VER+L GNP Sbjct: 121 AGLYQVEYRAVPLAEDFTLRSEDYLGHGQAIGGIIFPNPNAPTGCLLGLADVERILQGNP 180 Query: 178 DRVVIVDEAYIDFGGDSAIDLVARHANLLVVQTLSKSRSLAGLRVGFAVGHADLISALER 237 +RVV+VDEAYIDFGG SAI LV R+ NLLVVQTLSKSR+LAG+RVGFAVGHADLI ALER Sbjct: 181 ERVVVVDEAYIDFGGQSAIPLVQRYPNLLVVQTLSKSRALAGMRVGFAVGHADLIDALER 240 Query: 238 VKNSFNSYPLDRVAIAGATAAMEDDAHFDSTRNAVIASRDKLVGQLTALGFEVLPSAANF 297 VKNSFNSYPLDR AIAGATAA+ED+ +F T N VIASR L QL LGF+VLPSAANF Sbjct: 241 VKNSFNSYPLDRPAIAGATAAIEDEDYFRKTCNMVIASRTALAAQLAGLGFQVLPSAANF 300 Query: 298 VFARHPQHDAAGLAAKLRGDGIIVRHFTSTRINQFLRITVGTDESCGALIDSLRKHL 354 +F RHPQHDAA LAA LR DGIIVRHF S RI+QFLRIT+GTDE CG L+++LR+HL Sbjct: 301 LFVRHPQHDAAQLAAALRADGIIVRHFKSERISQFLRITIGTDEDCGVLVEALRRHL 357 >gi|300313353|ref|YP_003777445.1| histidinol-phosphate aminotransferase 1 protein [Herbaspirillum seropedicae SmR1] Length = 372 Score = 124 bits (310), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 111/363 (30%), Positives = 170/363 (46%), Gaps = 26/363 (7%) Query: 8 IVSRLTPYTPGEQ----PKISKLVKLNTNENPYGPSPKAIAAMVQEIGD-SLRLYPNPDA 62 I + + P G Q P +VKL+ ENPY + + Q + L YP P Sbjct: 17 IANVIRPVVRGWQSYHVPSAEGMVKLDAMENPYLLPAELREQLAQRLAALELNRYPVPSY 76 Query: 63 EPLKLAIAKRHGLSPA--QVFVGNGSDEVLAHAFQALLKHGAPILFPDITYSFYPTYASL 120 LK AI K G+ PA V +GNGSDE++ A + G IL P+ + Y A + Sbjct: 77 TALKAAICKGLGV-PAGYDVLLGNGSDELITLLSVACAQPGRTILAPEPGFVMYGVSAKM 135 Query: 121 YEVEYRAVPLAGDFTIRVDDYLGQGEAIGGII--FPNPNAPTGCLLALDEVERLL-AGNP 177 +EY VPL D ++ + L EA +I PN PTG L + +V R++ A P Sbjct: 136 AGLEYVGVPLCADLSLDLPAMLAAMEAHKPVITWLGYPNNPTGTLYEMADVLRIVEAAAP 195 Query: 178 DRVVIVDEAYIDFGGDSAIDLVARHANLLVVQTLSKSRSLAGLRVGFAVGHADLISALER 237 +V+VDEAY F + + + +H NL++++T+SK LAG+R+G+ L+ L++ Sbjct: 196 YGLVVVDEAYQPFAASTLMPALPQHNNLVLMRTVSK-LGLAGIRLGYLSAAPALLRELDK 254 Query: 238 VKNSFNSYPLDRVAIAGATAAMEDDAHFDSTRNAVIASRDKLVGQLTAL----GFEVLPS 293 V+ +N V + AA+ H D + R L G +V PS Sbjct: 255 VRPPYN------VNVLTEAAALFMLEHLDVLQAQAARLRQARSALAAELAALDGVQVFPS 308 Query: 294 AANFVFARHPQHDAAGLAAKLRGDGIIVRHFTSTRI--NQFLRITVGTDESCGALIDSLR 351 AANF+ R P DA + A L ++V++ + LRITV +D+ + +L+ Sbjct: 309 AANFLLIRVP--DADKVCASLLAHRVLVKNAGRMHVLLQNCLRITVSSDKENAMFLAALK 366 Query: 352 KHL 354 L Sbjct: 367 TAL 369 >gi|300311875|ref|YP_003775967.1| aspartate/tyrosine/aromatic aminotransferase [Herbaspirillum seropedicae SmR1] Length = 431 Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 84/295 (28%), Positives = 134/295 (45%), Gaps = 26/295 (8%) Query: 23 ISKLVKLNTNENPYG-PSPKAIAAMVQEIGDSLRLYPNPDAEPLKLAIAKRHGLSPAQVF 81 + KLV++ + +G S K I + + I R D +P AI Sbjct: 86 VEKLVEVAQRPDTHGYSSSKGIPRLRRAIAHWYRSRYEVDFDPDSEAI------------ 133 Query: 82 VGNGSDEVLAHAFQALLKHGAPILFPDITYSFYPTYASLYEVEYRAVPLAG--DFTIRVD 139 V GS E LAH A L G +L P+ +Y + A + R+V ++ DF ++ Sbjct: 134 VTIGSKEGLAHLMLATLDKGDTVLVPNPSYPIHIYGAVIAGANIRSVRMSPGVDFFDELE 193 Query: 140 DYLGQG-EAIGGIIFPNPNAPTGCLLALDEVERL--LAGNPDRVVIVDEAYID--FGGDS 194 + + +I P+ PT + L+ ER+ LA +V+ D AY D F G Sbjct: 194 RAVRESYPKPKMMILGFPSNPTAQCVELEFFERVVKLAREHQILVVHDLAYADITFDGWK 253 Query: 195 AIDLV----ARHANLLVVQTLSKSRSLAGLRVGFAVGHADLISALERVKNSFNSYPLDRV 250 A ++ AR + TLSKS ++AG R+GF VG+A L++AL R+K+ + V Sbjct: 254 APSIMQVPGAREVAVEFF-TLSKSYNMAGWRIGFMVGNARLVAALARIKSYHDYGSFTPV 312 Query: 251 AIAGATAAMEDDAHFDSTRNAVIASRDKLVGQLTALGFEV-LPSAANFVFARHPQ 304 +A A D + + R R+ LV L G+ V +P A+ +++AR P+ Sbjct: 313 QVAAIAALEGDQSCVEEIRANYERRRNVLVKGLHEAGWMVDVPKASMYIWARIPE 367 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,180,064 Number of extensions: 53056 Number of successful extensions: 197 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 195 Number of HSP's successfully gapped: 4 Length of query: 355 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 269 Effective length of database: 1,212,660 Effective search space: 326205540 Effective search space used: 326205540 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)