BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0130.p (385 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310948|ref|YP_003775040.1| branched-chain amino acid ABC t... 254 6e-69 gi|300312761|ref|YP_003776853.1| branched-chain amino acid ABC t... 228 5e-61 gi|300309516|ref|YP_003773608.1| branched-chain amino acid ABC t... 177 1e-45 gi|300313247|ref|YP_003777339.1| branched-chain amino acid ABC t... 140 2e-34 gi|300310991|ref|YP_003775083.1| branched-chain amino acid ABC t... 98 1e-21 >gi|300310948|ref|YP_003775040.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 394 Score = 254 bits (650), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 131/349 (37%), Positives = 204/349 (58%), Gaps = 1/349 (0%) Query: 28 EEVQTVTIGFVGALSGVSESFGKSLANAAELAIFEANRKPFKINGKRVQFRLLRMDDRND 87 +E T+ IGF G LSG S GKS+ N +LA+ EANR+ +I GK Q RL+ DDR D Sbjct: 35 QETATLAIGFAGPLSGPSGGVGKSMQNGVQLALAEANRRGLRIGGKSWQLRLIAQDDRAD 94 Query: 88 AERTQRVAQALVKAGVIGVIGGTNSNTSIAASKIFADAGVPQISPTSSLRKYTGQGFRTT 147 + VA++LV+ VI V+G S TS+AA+ ++ AGV Q++P++ R+ T + Sbjct: 95 PATAEFVARSLVQQQVIAVVGHWTSGTSLAAAPVYHRAGVIQVTPSAMSRRLTAMSYPRI 154 Query: 148 FRMLGIDDDACIYLGEYAVKELHAQRIAVIDNGTVFGVNVGTRFSEVAREHGAVIVSRDS 207 FR + ++ YAV +L + I ID+ T FG + +F+ A E GA +V R S Sbjct: 155 FRTIPNNESLGRLAAGYAVDKLETRTIVTIDDRTPFGQGLAEQFARTASERGAQVVGRYS 214 Query: 208 VSDVLMNFGEILQRVKAQDIDAVFFGGYSAQTSMLAQSMLRLEVKARLVTSMNGIVGSSF 267 VSD +F L + D +FFGG Q +LA+S+ RL++ ARL+ S G +G F Sbjct: 215 VSDKTSDFNAALLEARKLQPDLIFFGGLDWQAGVLAKSIRRLKLHARLMAS-PGTLGLPF 273 Query: 268 LISSGVAVNGTVAQEAGIPFNKMPGWKKFEADFNQRFDFQVYSMTPYAYDAAHVLMAAVR 327 L+ +G NG + E G P +KMPGWK F +++ FD + +AY+AA ++ +R Sbjct: 274 LMRAGPDANGALVLEPGPPQDKMPGWKSFRQRYSENFDSDMDLYAVFAYEAAQAIIQGIR 333 Query: 328 RANSLNPRKVTNTLHEISFKGLTGIIAFDAVGNPRSPSYTIYEAQNQKW 376 +A S +P ++ +H + F+G++G +AF+ G+ PS+T+YE ++Q+W Sbjct: 334 QAGSADPERIAEAMHRLRFEGVSGPVAFNEEGDLLQPSFTMYEVKDQRW 382 >gi|300312761|ref|YP_003776853.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 380 Score = 228 bits (582), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 139/377 (36%), Positives = 208/377 (55%), Gaps = 6/377 (1%) Query: 4 LKYRRMLMFCILSLALHASGALASEEVQTVTIGFVGALSGVSESFGKSLANAAELAIFEA 63 +K + ++ ++ L +GA S+EV V I VG LSG + GK N A +A+ E Sbjct: 1 MKLKSAIIPLTAAIGLAFAGAAYSQEV--VKIAHVGPLSGPNAHMGKDNENGARMAVDEL 58 Query: 64 NRKPFKINGKRVQFRLLRMDDRNDAERTQRVAQALVKAGVIGVIGGTNSNTSIAASKIFA 123 N K F I GK+V+F L+ DD +D ++ VA LV V VIG NS T+I ASKI++ Sbjct: 59 NAKGFTIGGKKVKFELVGEDDASDPKQATAVATKLVDQKVAAVIGHLNSGTTIPASKIYS 118 Query: 124 DAGVPQISPTSSLRKYTGQGFRTTFRMLGIDDDACIYLGEYAVKELHAQRIAVIDNGTVF 183 DAG+PQ+SP+++ KYT QGF+T FR++ D LG+YAV++L ++IAVID+ T + Sbjct: 119 DAGIPQVSPSATNPKYTQQGFKTAFRVVANDAQLGAALGKYAVQKLGTKQIAVIDDRTAY 178 Query: 184 GVNVGTRFSEVAREHGAVIVSRDSVSDVLMNFGEILQRVKAQDIDAVFFGGYSAQTSMLA 243 G V F++ A+ G IV +D +F IL +K + D VFFGG A + Sbjct: 179 GQGVADEFAKGAKAAGGTIVGTQYTNDKATDFNAILTSLKGKKPDVVFFGGMDAVGGPML 238 Query: 244 QSMLRLEVKARLVTSMNGIVGSSF--LISSGVAVNGTVAQEA-GIPFNKMPGWKKFEADF 300 + M +L + A+ + +GI S L G+ + + EA G+ G F A + Sbjct: 239 RQMKQLGISAKFMGG-DGICTGSLPGLAGDGLGDDQVICAEAGGVDEAGKKGMDDFRAAY 297 Query: 301 NQRFDFQVYSMTPYAYDAAHVLMAAVRRANSLNPRKVTNTLHEISFKGLTGIIAFDAVGN 360 ++F V YAYDA + A+ +A S +P+K L +IS KG+TG+IAFDA G+ Sbjct: 298 KKKFGIDVVYNAAYAYDATMTVADAMAKAGSADPKKYLPELAKISHKGVTGVIAFDAKGD 357 Query: 361 PRSPSYTIYEAQNQKWT 377 + S T+Y + + T Sbjct: 358 IKDGSLTLYTYKGGQRT 374 >gi|300309516|ref|YP_003773608.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 378 Score = 177 bits (449), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 115/355 (32%), Positives = 186/355 (52%), Gaps = 4/355 (1%) Query: 16 SLALHASGALASEEVQTVTIGFVGALSGVSESFGKSLANAAELAIFEANRKPFKINGKRV 75 SLAL + A+A +E Q V IGF L+G S GK +AI N +P + GK++ Sbjct: 14 SLALIPAFAMA-QETQVVKIGFSSPLTGPQASAGKDNQGGLMMAIERLNAQPITVGGKKI 72 Query: 76 QFRLLRMDDRNDAERTQRVAQALVKAGVIGVIGGTNSNTSIAASKIFADAGVPQISPTSS 135 +F ++ DD+ D + VAQ L GV ++G NS +I AS+++ DAG+ ++ +S Sbjct: 73 KFDVIAEDDQADPKSGVAVAQKLADQGVKAIVGPYNSGVTIPASRVYNDAGI-VVATVAS 131 Query: 136 LRKYTGQGFRTTFRMLGIDDDACIYLGEYAVKELHAQRIAVIDNGTVFGVNVGTRFSEVA 195 K T QGF T FR+ D + YA KEL +R+AVID+ T +G + F +VA Sbjct: 132 NPKITQQGFATLFRVAASDSQLGGKMALYAAKELKFKRVAVIDDRTAYGQGLAQEFIKVA 191 Query: 196 REHGAVIVSRDSVSDVLMNFGEILQRVKAQDIDAVFFGGYSAQTSMLAQSMLRLEVKARL 255 + +G +VS D +D +F IL +K + DAVF GGY+ Q + + M +L V L Sbjct: 192 KANGIDVVSTDFTNDKATDFTAILTSIKGKKPDAVFLGGYAPQGGPIKRQMKQLGVDVPL 251 Query: 256 VTSMNGIVGSSFLISSGVAVNGTV-AQEAGIPFNKMPGWKKFEADFNQRFDFQVYSMTPY 314 + +GI G A+ +V + G +K K F ++ ++++ + Sbjct: 252 MGG-DGICSPEMGRLGGDAIGESVYCTQGGTMLDKAKEGKVFSDEYQKKYNRPAETYAVS 310 Query: 315 AYDAAHVLMAAVRRANSLNPRKVTNTLHEISFKGLTGIIAFDAVGNPRSPSYTIY 369 YD ++ A+++ANS++P++ L +IS+KG+ G FDA + + T+Y Sbjct: 311 FYDGMMLIAQAMKQANSVDPKQFGPALAKISYKGVAGQYDFDANHDLKQSPVTVY 365 >gi|300313247|ref|YP_003777339.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 385 Score = 140 bits (352), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 112/378 (29%), Positives = 177/378 (46%), Gaps = 18/378 (4%) Query: 7 RRMLMFCILSLALHASGALASEEVQTVTIGFVGALSGVSESFGKSLANAAELAIFEANRK 66 RR+L +L A +G ++E +T+ +GF G LS E +S A+LAI EAN Sbjct: 7 RRVLAGVLLLWAFMQAGW--AQERKTIALGFTGRLS---EPIAQSALQGAQLAIDEAN-- 59 Query: 67 PFKINGKR---VQFRLLRMDDRNDAERTQRVAQALVKAGVIGVIGGTNSNTSIAASKIFA 123 + KR ++F LL DD + +A+ VK V GVIG +S+ ++A + I+ Sbjct: 60 --ALAAKRRSPLRFELLPQDDHGNENFAVNIARYYVKEKVAGVIGPWSSDAALATAAIYE 117 Query: 124 DAGVPQISPTSSLRKYTGQGFRTTFRMLGIDDDACIYLGEYAVKELHAQRIAVIDNGTVF 183 A +PQI T++ ++TG G R FR++G + L E A + L +RI VI + + Sbjct: 118 SAQIPQIGFTATSSQWTGMGNRMPFRVVGGTRELAATLAEVATRSLQGRRIFVIQSDAAY 177 Query: 184 GVNVGTRFSE-VAREHGAVIVSRDSVSDVLMNFGEILQRVKAQDIDAVFFGGYSAQTSML 242 + E + + ++R V +F L+ +A D + F G Q Sbjct: 178 SRALADTLVENLGGSAQQIALARYQVGRRSTDFHAALKAAEAHQADVIVFVGLYPQARAF 237 Query: 243 AQSMLRLEVKARLVTSMNGIVGSSFLISSGVAVNGTVAQEAGIPFNKMPGWKKFEADFNQ 302 R ARL+ + S+ + + + + V E I P WK + + Sbjct: 238 IDGANRTRTTARLLLTGG---ASNLSLPAPLELRLHVL-EYEIARPHCPQWKVVTQTYQR 293 Query: 303 RFDFQVYSMTPYAYDAAHVLMAAVRRANSLNPRKVTNTLHEISFKGLTGIIAFDAVGNPR 362 RF + + YAYDAA VL AA+ +A S N K+ LH + GL G ++FDA G Sbjct: 294 RFGAAPTTYSFYAYDAASVLTAAIVQAGSDNGDKIATALHRMRHAGLHGTLSFDATGANA 353 Query: 363 SPSYTIYEAQNQKWTAMK 380 P YT+ Q ++W A++ Sbjct: 354 HPRYTLLRYQ-ERWQAVE 370 >gi|300310991|ref|YP_003775083.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 373 Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 83/344 (24%), Positives = 153/344 (44%), Gaps = 14/344 (4%) Query: 31 QTVTIGFVGALSGVSESFGKSLANAAELAIFEANRKPFKINGKRVQFRLLRMDDRNDAER 90 +TV I G ++G +G + A AI + N NG + F + MDD + ++ Sbjct: 27 ETVKIAIAGPMTGAVAQYGDMVKAGALTAIEQINAA-GGANGNK--FEAVMMDDACEPKQ 83 Query: 91 TQRVAQALVKAGVIGVIGGTNSNTSIAASKIFADAGVPQISPTSSLRKYT-GQGFRTTFR 149 VA +V G+ VIG S ++I AS I+ + GV I+P+++ + T + + FR Sbjct: 84 AVAVANKIVSQGIKYVIGHVCSGSTIPASDIYENEGVVMITPSATAPQLTEAKPHKFIFR 143 Query: 150 MLGIDDDACIYLGEYAVKELHAQRIAVIDNGTVFGVNVGTRFSEVAREHGAVIVSRDSVS 209 +G DD Y +++L +++AV+ + +G V + +V + ++ Sbjct: 144 TIGRDDQQGPAAARYVIEKLKPKKVAVLHDKQSYGQGVASSVKAALDAAKVPVVVFEGIN 203 Query: 210 DVLMNFGEILQRVKAQDIDAVFFGGYSAQTSMLAQSMLRLEVKARLVTSMNGIVGSSFLI 269 ++ I+ ++K+Q +D V+FGGY + ++ + +KA + G+ Sbjct: 204 AGDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMRQAREQGIKA-VFMGPEGVGNKDITA 262 Query: 270 SSGVAVNGTV----AQEAGIPFNKMPGWKKFEADFNQRFDFQVYSMTPYAYDAAHVLMAA 325 +G A G + A A P N A + FQ+ AY ++ A Sbjct: 263 IAGPASEGMLVTLPADFAADPANAALVKAFAAAKRDPNGPFQM-----PAYSGVKIIADA 317 Query: 326 VRRANSLNPRKVTNTLHEISFKGLTGIIAFDAVGNPRSPSYTIY 369 + A S +P KV +H SFK G + +D G+ +S + ++ Sbjct: 318 IAGAKSTDPEKVAAYIHANSFKTPIGNVEYDKKGDLKSFKFVVF 361 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,042,560 Number of extensions: 41422 Number of successful extensions: 177 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 169 Number of HSP's successfully gapped: 6 Length of query: 385 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 298 Effective length of database: 1,207,925 Effective search space: 359961650 Effective search space used: 359961650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)