BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0129.p (555 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313989|ref|YP_003778081.1| ABC transporter ATPase [Herbasp... 1085 0.0 gi|300310722|ref|YP_003774814.1| ABC transporter ATPase [Herbasp... 333 3e-92 gi|300311530|ref|YP_003775622.1| ABC transporter ATPase [Herbasp... 236 4e-63 gi|300311473|ref|YP_003775565.1| ABC transporter ATPase [Herbasp... 220 3e-58 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 83 5e-17 >gi|300313989|ref|YP_003778081.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 555 Score = 1085 bits (2806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 531/555 (95%), Positives = 544/555 (98%) Query: 1 MAQYVFTMNRVGKIVPPKRQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIE 60 MAQYVFTMNRVGKIVPPKRQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIE Sbjct: 1 MAQYVFTMNRVGKIVPPKRQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIE 60 Query: 61 GEATPAPNLNIGYLPQEPQLDPEKNVRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDA 120 GEA P PNLNIGYLPQEPQLD EK VRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDA Sbjct: 61 GEAIPMPNLNIGYLPQEPQLDAEKTVRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDA 120 Query: 121 LATEQARLEAIISASDGNSLNQQLEMAADALRLPPWDARIAVLSGGEKRRVALCKLLLSK 180 LATEQARLEAII+A+DGNSLNQQLEMAADALRLPPWDA+I VLSGGEKRRVALCKLLLSK Sbjct: 121 LATEQARLEAIIAAADGNSLNQQLEMAADALRLPPWDAKIGVLSGGEKRRVALCKLLLSK 180 Query: 181 PDMLLLDEPTNHLDAESVDWLEQFLLRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPW 240 PDMLLLDEPTNHLDAESVDWLEQFL RFPGTVVAITHDRYFLDNAAEWILELDRGHGIPW Sbjct: 181 PDMLLLDEPTNHLDAESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPW 240 Query: 241 KGNYSSWLEQKEARLKQEEATESARQKTIAKELEWVRQNPKGRQAKSKARLSRFNELSEH 300 KGNYSSWLEQKEARLKQEEA+ESARQKTIAKELEWVRQNPKGRQAKSKARL+RFNELSE+ Sbjct: 241 KGNYSSWLEQKEARLKQEEASESARQKTIAKELEWVRQNPKGRQAKSKARLARFNELSEY 300 Query: 301 EYQKRNETSEIFIPVAERLGNEVIEFKGVSKGYGDRLLIDNLNFKIPAGAIVGIIGPNGA 360 EYQKRNET EIFIPVAERLGNEVIEFK VSKGYGDRLLID+LNFKIPAGAIVGIIGPNGA Sbjct: 301 EYQKRNETQEIFIPVAERLGNEVIEFKNVSKGYGDRLLIDDLNFKIPAGAIVGIIGPNGA 360 Query: 361 GKSTLFRMLAGREQPDSGELVLGPTVRISLVDQSREDLENKKTVFEDVAGGADILTVGRF 420 GKSTLFRMLAGRE PDSGE+VLGPTV++SLVDQSREDL NKKTVFEDV+GGADILTVGRF Sbjct: 361 GKSTLFRMLAGRETPDSGEVVLGPTVKVSLVDQSREDLGNKKTVFEDVSGGADILTVGRF 420 Query: 421 EMPSRAYLGRFNFKGGDQQKIVGNLSGGERGRLHLAKTLLQGGNVLLLDEPSNDLDVETL 480 EMPSRAYLGRFNFKGGDQQKIVGNLSGGERGRLHLAKTLLQGGNVLLLDEPSNDLDVETL Sbjct: 421 EMPSRAYLGRFNFKGGDQQKIVGNLSGGERGRLHLAKTLLQGGNVLLLDEPSNDLDVETL 480 Query: 481 RALEDALLEFAGTVLVISHDRWFLDRIATHIISFEGDSQVSFFDGNYQEYEADKKKRLGE 540 RALEDALLEFAGTVLVISHDRWFLDRIATHII+FEGDSQV+FFDGNYQEYEADKKKRLGE Sbjct: 481 RALEDALLEFAGTVLVISHDRWFLDRIATHIIAFEGDSQVTFFDGNYQEYEADKKKRLGE 540 Query: 541 EGAKPKRIRYKPVTR 555 E AKPKRIRYKPVTR Sbjct: 541 EAAKPKRIRYKPVTR 555 >gi|300310722|ref|YP_003774814.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 640 Score = 333 bits (853), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 197/513 (38%), Positives = 295/513 (57%), Gaps = 5/513 (0%) Query: 21 ILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIEGEATPAPNLNIGYLPQEPQL 80 +L S G +IG++G NG+GKS+LLKI+AG K +G NL I Y+ QEP Sbjct: 18 LLDHAEFSLETGERIGLIGRNGTGKSSLLKIIAGRSKLDDGLLVMQQNLKIAYVDQEPHF 77 Query: 81 DPEKNVRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDALATEQARLEAIISASDGNSL 140 E V V S LGE+ A+ +A+ + ++ D AL +++ ++ A+D S+ Sbjct: 78 PEEMTVFDAVASGLGELPALLAEYEAITGQFGGDNDD--ALLERMHQIQTVLDAADAWSI 135 Query: 141 NQQLEMAADALRLPPWDARIAVLSGGEKRRVALCKLLLSKPDMLLLDEPTNHLDAESVDW 200 ++E D L L DARI LSGG K+RVAL L+ PD+LLLDEPTNHLD S+ W Sbjct: 136 GNKVETTLDKLNLNR-DARIGELSGGMKKRVALACGLVGNPDVLLLDEPTNHLDFGSILW 194 Query: 201 LEQFLLRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPWKGNYSSWLEQKEARLKQEEA 260 LE L F G+++ ITHDR FLDN + I+ELDRG + + GN++++ +K L EE Sbjct: 195 LEGLLRDFKGSILFITHDRSFLDNVSTRIIELDRGKILSFPGNFTTYQTRKAELLANEEV 254 Query: 261 TESARQKTIAKELEWVRQNPKGRQAKSKARLSRFNELSEHEYQKRNETSEIFIPVA--ER 318 + K +A+E W+R+ + R+ + + R+ R L ++R ++ + V ER Sbjct: 255 ENAKFDKFLAQEEVWIRKGVQARRTRDEGRVRRLEALRVQRSERRERQGQVKLEVGTGER 314 Query: 319 LGNEVIEFKGVSKGYGDRLLIDNLNFKIPAGAIVGIIGPNGAGKSTLFRMLAGREQPDSG 378 G V E + V+K YG + ++ + + + G VG+IG NGAGK+TL +++ G E PDSG Sbjct: 315 SGKIVAELENVNKAYGPKTIVRDFSTILMRGDKVGLIGQNGAGKTTLLKLILGEEAPDSG 374 Query: 379 ELVLGPTVRISLVDQSREDLENKKTVFEDVAGGADILTVGRFEMPSRAYLGRFNFKGGDQ 438 + G ++++ DQ R L + T+ + +A G+D + V YL F F Sbjct: 375 TVKQGTKMQVAYFDQMRAQLNEETTLADTIAPGSDWVEVNGQRKHVMTYLSDFLFAPERA 434 Query: 439 QKIVGNLSGGERGRLHLAKTLLQGGNVLLLDEPSNDLDVETLRALEDALLEFAGTVLVIS 498 + V LSGGER RL LA+ + NVL+LDEP+NDLD++TL LE+ L E+ GTV ++S Sbjct: 435 RSPVRTLSGGERNRLLLARLFAKPANVLVLDEPTNDLDIDTLELLEELLEEYEGTVFLVS 494 Query: 499 HDRWFLDRIATHIISFEGDSQVSFFDGNYQEYE 531 HDR FLD + T +I+ EG+ + G Y ++E Sbjct: 495 HDRMFLDNVVTQVIASEGNGVWREYVGGYSDWE 527 Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 122/252 (48%), Gaps = 35/252 (13%) Query: 323 VIEFKGVSKGYGDRLLIDNLNFKIPAGAIVGIIGPNGAGKSTLFRMLAGREQPDSGELVL 382 VI +G L+D+ F + G +G+IG NG GKS+L +++AGR + D G LV+ Sbjct: 3 VISLSDAQLAFGHVALLDHAEFSLETGERIGLIGRNGTGKSSLLKIIAGRSKLDDGLLVM 62 Query: 383 GPTVRISLVDQSREDLENKKTVFEDVAGGADIL---------TVGRF------EMPSRAY 427 ++I+ VDQ + TVF+ VA G L G+F + R + Sbjct: 63 QQNLKIAYVDQEPH-FPEEMTVFDAVASGLGELPALLAEYEAITGQFGGDNDDALLERMH 121 Query: 428 LGRFNFKGGDQQKI------------------VGNLSGGERGRLHLAKTLLQGGNVLLLD 469 + D I +G LSGG + R+ LA L+ +VLLLD Sbjct: 122 QIQTVLDAADAWSIGNKVETTLDKLNLNRDARIGELSGGMKKRVALACGLVGNPDVLLLD 181 Query: 470 EPSNDLDVETLRALEDALLEFAGTVLVISHDRWFLDRIATHIISFEGDSQVSFFDGNYQE 529 EP+N LD ++ LE L +F G++L I+HDR FLD ++T II + +S F GN+ Sbjct: 182 EPTNHLDFGSILWLEGLLRDFKGSILFITHDRSFLDNVSTRIIELDRGKILS-FPGNFTT 240 Query: 530 YEADKKKRLGEE 541 Y+ K + L E Sbjct: 241 YQTRKAELLANE 252 Score = 79.3 bits (194), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 77/284 (27%), Positives = 118/284 (41%), Gaps = 73/284 (25%) Query: 2 AQYVFTMNRVGKIVPPKRQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIEG 61 + V + V K PK I++D S G K+G++G NG+GK+TLLK++ G + G Sbjct: 316 GKIVAELENVNKAYGPK-TIVRDFSTILMRGDKVGLIGQNGAGKTTLLKLILGEEAPDSG 374 Query: 62 EATPAPNLNIGYLPQ-EPQLDPEKNVRQEVESALGEV-FEAQAKLDAVYAAYAEEDADFD 119 + + Y Q QL+ E + + V Q K Y + DF Sbjct: 375 TVKQGTKMQVAYFDQMRAQLNEETTLADTIAPGSDWVEVNGQRKHVMTYLS------DF- 427 Query: 120 ALATEQARLEAIISASDGNSLNQQLEMAADALRLPPWDARIAVLSGGEKRRVALCKLLLS 179 A E+AR + + LSGGE+ R+ L +L Sbjct: 428 LFAPERAR------------------------------SPVRTLSGGERNRLLLARLFAK 457 Query: 180 KPDMLLLDEPTNHLDAESVDWLEQFLLRFPGTVVAITHDRYFLDNAAEWILELDRGHGIP 239 ++L+LDEPTN LD ++++ LE+ L + GTV ++HDR FLDN ++ G+G+ Sbjct: 458 PANVLVLDEPTNDLDIDTLELLEELLEEYEGTVFLVSHDRMFLDNVVTQVIA-SEGNGV- 515 Query: 240 WK---GNYSSWLEQKEARLKQEEATESARQKTIAKELEWVRQNP 280 W+ G YS +W RQ P Sbjct: 516 WREYVGGYS----------------------------DWERQRP 531 >gi|300311530|ref|YP_003775622.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 532 Score = 236 bits (602), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 171/534 (32%), Positives = 281/534 (52%), Gaps = 36/534 (6%) Query: 19 RQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIEGEATPAPNLNIGYLPQEP 78 + + ++IS+ F G + G++G NG GKST +KI+ G + G + N +G L Q+ Sbjct: 14 KPLFENISVKFGDGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDVNERLGKLRQDQ 73 Query: 79 QLDPEKNVRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDALATEQARLEAIISASDGN 138 E V V E++ A ++ DA+YA D D+ + A LEA + DG Sbjct: 74 FAYEEMRVLDVVMMGHVEMWAAMSERDAIYANPDATDDDY----MKAADLEAKFAEYDGY 129 Query: 139 SLNQQLEMAADALRLP--PWDARIAVLSGGEKRRVALCKLLLSKPDMLLLDEPTNHLDAE 196 + + + +P + ++ ++ G K RV L + L S PD+LLLDEPTN+LD Sbjct: 130 TAEARAGELLLGVGVPIEQHNGPMSNVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDIN 189 Query: 197 SVDWLEQFLLRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPWKGNYSSW-LEQKEARL 255 ++ WLE+ L T++ I+HDR+FL+ + ++D G + GNY + L +AR Sbjct: 190 TIRWLEEVLNERNSTMIIISHDRHFLNQVCTHMADMDYGTLKIYPGNYDDYMLASSQARA 249 Query: 256 KQEEATESARQKTIAKELEWVRQ----NPKGRQAKSKARLSRFNELSEHEYQKRNETSE- 310 +Q A A++K +A+ ++VR+ K RQA S+A+ + +++ + + + + Sbjct: 250 QQLAANAKAKEK-VAELQDFVRRFSANKSKARQATSRAK--QIDKIKVEDIKPSSRVNPF 306 Query: 311 IFIPVAERLGNEVIEFKGVSKGYGDRLLIDNLNFKIPAGAIVGIIGPNGAGKSTLFRMLA 370 I ++L +E +G++K Y DR + N + + AG + IIG NGAGK+TL R + Sbjct: 307 IRFEGEKKLHRLAVETQGITKTY-DRDIFKNFSIMVEAGEKIAIIGANGAGKTTLLRSIG 365 Query: 371 GRE---QPDSGELVLGPTVRISLVDQSREDLENKKTVFEDVAGGADILT-VGRF------ 420 G PD G + + + Q E+ AGG + +G++ Sbjct: 366 GDVTGLHPDGGLVKWAENANVGYMPQDPT---------EEFAGGETLTDWMGKWTQEGDD 416 Query: 421 EMPSRAYLGRFNFKGGDQQKIVGNLSGGERGRLHLAKTLLQGGNVLLLDEPSNDLDVETL 480 + R LGR F G D +K V LSGGE+GR+ K +L NVLL+DEP+N +D+E++ Sbjct: 417 DQAVRGILGRLLFSGDDVKKSVKVLSGGEKGRMMYGKLMLGRHNVLLMDEPTNHMDMESI 476 Query: 481 RALEDALLEFAGTVLVISHDRWFLDRIATHIISFEGDSQVSFFDGNYQEYEADK 534 +L AL ++AGT++ +SHDR F+ +AT I+ + D QV F G Y++Y A + Sbjct: 477 ESLNIALEKYAGTLIFVSHDREFVSSLATRILEVK-DGQVIDFQGGYEDYLASQ 529 >gi|300311473|ref|YP_003775565.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 660 Score = 220 bits (560), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 167/535 (31%), Positives = 269/535 (50%), Gaps = 44/535 (8%) Query: 21 ILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIEGEATPAPNLNIGYLPQE-PQ 79 +L+++ L+ PG KIG++G NG+GKS+L ++ G +G + Y+ QE P Sbjct: 16 LLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHADQGNIDFPARWRMAYVAQETPA 75 Query: 80 LDPEKNVRQEVESALGEVFEAQAKLDAVYA--AYAEEDADFDALATEQARLEAIISASDG 137 LD R +E A+ + A L + A A AE D A L ++ +D Sbjct: 76 LD-----RPAIEYAI----DGDAHLRQLEAELARAEAQPDDKHDGNHIAELHTALADADA 126 Query: 138 NSLNQQLE--MAADALRLPPWDARIAVLSGGEKRRVALCKLLLSKPDMLLLDEPTNHLDA 195 ++ + E + L + +A SGG + R+ L + L+ D+LLLDEPTNHLD Sbjct: 127 YTVRSRAEQLLLGLGFSLEQMERPVASFSGGWRMRLNLAQALMCPSDLLLLDEPTNHLDL 186 Query: 196 ESVDWLEQFLLRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPWKGNYSSWLEQKEARL 255 +++ WLE +L R+ GT++ I+HDR FLD I+ +D + GNYS++ Q+ A+L Sbjct: 187 DAIIWLEDWLKRYEGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNYSAFERQRSAQL 246 Query: 256 KQEEATESARQKTIAKELEWV----RQNPKGRQAKSKAR-LSRFNELSEHEYQKRNETSE 310 + +Q+ A ++ + K RQA+S+ + LS+ EL+ +E Sbjct: 247 ELMAGMIEKQQRQRAHLQSFIDRFKAKATKARQAQSRMKALSKMEELA-----PLRAAAE 301 Query: 311 IFIPVAERLG--NEVIEFKGVSKGYG----------DRLLIDNLNFKIPAGAIVGIIGPN 358 E L N ++ + V+ GY D++++ ++F + G +G++G N Sbjct: 302 FSFEFREPLSAPNPLLVMEKVNAGYHIEGKNGAPDEDKIIVHGIDFSLQNGQRIGLLGVN 361 Query: 359 GAGKSTLFRMLAGREQPDSGELVLGPTVRISLVDQSREDL--ENKKTVFEDVAGGADILT 416 GAGKSTL + +AG P SG LG + I Q + ++ ++ ++ D+ Sbjct: 362 GAGKSTLIKTVAGEIDPLSGTARLGKGLVIGYFAQHQVEMLRHDESPLWHLTRLAPDVR- 420 Query: 417 VGRFEMPSRAYLGRFNFKGGDQQKIVGNLSGGERGRLHLAKTLLQGGNVLLLDEPSNDLD 476 E R +LG FNF G + SGGE+ RL LA + Q N+LLLDEP+N LD Sbjct: 421 ----EQELRNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQRPNLLLLDEPTNHLD 476 Query: 477 VETLRALEDALLEFAGTVLVISHDRWFLDRIATHIISFEGDSQVSFFDGNYQEYE 531 +ET AL AL +F GT++++SHDR L R T + ++ FDG+ +Y+ Sbjct: 477 LETREALTMALAQFEGTLVLVSHDRHLL-RATTDQFLIVAEGKLQPFDGDLDDYK 530 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 83.2 bits (204), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 12/188 (6%) Query: 324 IEFKGVSKGYGDRLLIDNLNFKIPAGAIVGIIGPNGAGKSTLFRMLAGREQPDSGEL--- 380 + F V+K +GD +I+ +I +G +V ++GP+G GKSTL M AG E+P SG + Sbjct: 3 LSFNNVAKHFGDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVAGD 62 Query: 381 ---VLGPTVRISLVDQSREDLENKKTVFEDVAGGADILTVGRFEMPSRAYLGRFNFK-GG 436 + GP +L+ Q L T+ ++VA + +V + + +A + N K G Sbjct: 63 GQTIRGPHPERTLMFQENA-LYPWLTLQQNVALALEFQSVDKKKAAEQARVWLENVKLKG 121 Query: 437 DQQKIVGNLSGGERGRLHLAKTLLQGGNVLLLDEPSNDLDVETLRALEDALLEF----AG 492 + +SGG R R LA+ + LLLDEP LD T L+DAL + Sbjct: 122 FEHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQGP 181 Query: 493 TVLVISHD 500 TV++++HD Sbjct: 182 TVVLVTHD 189 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,603,410 Number of extensions: 64746 Number of successful extensions: 813 Number of sequences better than 1.0e-08: 74 Number of HSP's gapped: 740 Number of HSP's successfully gapped: 89 Length of query: 555 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 465 Effective length of database: 1,193,720 Effective search space: 555079800 Effective search space used: 555079800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)