BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0128.p
         (236 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313990|ref|YP_003778082.1| permease [Herbaspirillum serope...   300   6e-83
gi|300312842|ref|YP_003776934.1| chloramphenicol-sensitive prote...    66   2e-12

>gi|300313990|ref|YP_003778082.1| permease [Herbaspirillum
           seropedicae SmR1]
          Length = 298

 Score =  300 bits (768), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 159/233 (68%), Positives = 191/233 (81%)

Query: 1   VVRKPRVLLGFLLSALLLSGNWVLYVWAVNSGRIVDASLGYFMSPLISVLLGYVILKEKL 60
           VV++P V+ GFLLSALLL+GNW LYVWAVN+GRIVD SLGYFMSPL+SV +GY+ILKE++
Sbjct: 57  VVKRPMVVGGFLLSALLLTGNWTLYVWAVNAGRIVDTSLGYFMSPLMSVFMGYLILKERM 116

Query: 61  RPLQWLSVFMALGAVLWLTWINGALPWIGLVIAATFGIYGLLRKIAHLGALEGLALETIL 120
           RPLQWL+VF+ALGAV+WLT  NG+LPW+ L+IA +F  YGLLRK AHLGALEGL+LET+L
Sbjct: 117 RPLQWLAVFLALGAVIWLTIANGSLPWVSLLIALSFAFYGLLRKTAHLGALEGLSLETLL 176

Query: 121 LAPLVLAILAVTAAHGNNGFLQASPMSQILLALSGPVTAIPLLLFARAARRIPLSLLGLL 180
           + PLVL +L V     +N F  AS  ++ILLALSGP+TA+PLLLFA  ARRIPLS+LGL+
Sbjct: 177 MLPLVLLVLGVDTLRDSNAFTHASTSARILLALSGPITAVPLLLFAHGARRIPLSMLGLM 236

Query: 181 QYISPTMQLLTGVFIYDEPFDGPRLTGFVVIWAALAVYSLEGLWRLWSAKGRT 233
           QYISPT+QLL GV IY E F G R  GF VIWAALAVYS EGLWR    + ++
Sbjct: 237 QYISPTIQLLGGVLIYGEAFTGARAIGFCVIWAALAVYSAEGLWRYLRTRAQS 289


>gi|300312842|ref|YP_003776934.1| chloramphenicol-sensitive protein
           [Herbaspirillum seropedicae SmR1]
          Length = 300

 Score = 66.2 bits (160), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 102/198 (51%), Gaps = 3/198 (1%)

Query: 24  LYVWAVNSGRIVDASLGYFMSPLISVLLGYVILKEKLRPLQWLSVFMALGAVLWLTWING 83
           L++W   +G+ ++ SLGYF+ PL  VL+G ++  E+L  LQ L+V +A   V    W+  
Sbjct: 96  LFLWGSVNGQALEVSLGYFLLPLSMVLVGRLLYGERLNLLQRLAVLLACIGVAHEIWMTR 155

Query: 84  ALPWIGLVIAATFGIYGLLRKIAHLGALEGLALETILLAPLVLAILAVTAAHGNNGFLQA 143
           +  W  L +A  +  Y +LR+   L +L   A+E ++LA   L  +A+            
Sbjct: 156 SFSWPTLAVALGYPPYFILRRRLQLDSLMIFAVELLILALPALIAVALGDTLATT---LR 212

Query: 144 SPMSQILLALSGPVTAIPLLLFARAARRIPLSLLGLLQYISPTMQLLTGVFIYDEPFDGP 203
           +P   +LL   G ++ + L  + RA + +P+ L G+L Y+ P + +L  + +  E     
Sbjct: 213 TPAMLLLLPGLGLLSMVALACYLRAGKLLPMGLFGVLGYVEPILLVLVAIAVLGESLPLA 272

Query: 204 RLTGFVVIWAALAVYSLE 221
           +L  +V IW A+ + ++ 
Sbjct: 273 QLGTYVPIWLAVLLTAMH 290


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.143    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 677,342
Number of extensions: 25461
Number of successful extensions: 145
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 2
Length of query: 236
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 154
Effective length of database: 1,231,600
Effective search space: 189666400
Effective search space used: 189666400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)