BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0125.p (170 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel A... 125 2e-30 gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter AT... 120 6e-29 gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel A... 114 5e-27 gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp... 94 5e-21 gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPa... 91 7e-20 >gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 334 Score = 125 bits (314), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 69/162 (42%), Positives = 97/162 (59%), Gaps = 11/162 (6%) Query: 3 IXDEPTTALDATVQIQILLLLRDLQKELGLSIVFVTHDIGAAAEVADRIAVMYAGKIIEQ 62 I DEPTTALD T+Q QIL ++R+LQ+E G +++F+THD+G + +ADR+AVMYAG+++E Sbjct: 177 IADEPTTALDVTIQAQILRMIRELQQEFGAAVIFITHDLGVVSRIADRVAVMYAGQVVET 236 Query: 63 GPAAELLTRPRHPYTLSLLKSRS-HGAMQKGQRLETIGGAPPDLSNLPAGCAFAERCKYA 121 A+L +PRHPYT LL G G L+ I G P L +GCAF RC A Sbjct: 237 TDVAQLFAQPRHPYTQGLLNCIPVRGKTLPGSHLQAIPGVVPSLVGQVSGCAFRNRCAKA 296 Query: 122 VAECSSVQPRD-ELLSPGHVVS-----CLRVHQVPHANDVAA 157 + C RD +++ G V + CL++ A +VAA Sbjct: 297 DSGCE----RDPQMVQQGSVTAPHQARCLKLDVAMDAMEVAA 334 >gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 335 Score = 120 bits (301), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 60/152 (39%), Positives = 84/152 (55%), Gaps = 8/152 (5%) Query: 3 IXDEPTTALDATVQIQILLLLRDLQKELGLSIVFVTHDIGAAAEVADRIAVMYAGKIIEQ 62 + DE ALD ++Q QIL L DL+ ELGL+ +F++HD+G V+DR+ +MY G+++E Sbjct: 190 VCDEAVAALDVSIQAQILNLFMDLRAELGLTYLFISHDLGVVEHVSDRVVIMYLGRVVES 249 Query: 63 GPAAELLTRPRHPYTLSLLKSRSHGAMQKGQRLETIGGAPPDLSNLPAGCAFAERCKYAV 122 P AEL +P HPYT +LL +K + I G P N P GC F RC +A Sbjct: 250 APVAELFGQPNHPYTQALLAEVPRMGARK-KEFTAIKGEIPSPLNPPTGCHFNPRCPHAT 308 Query: 123 AECSSVQPRDELLSPGHVVSCLRVHQVPHAND 154 C QP ++PGH+ +C H ND Sbjct: 309 QRCREEQPLLREIAPGHMSAC-------HLND 333 >gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 330 Score = 114 bits (285), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 62/141 (43%), Positives = 85/141 (60%), Gaps = 2/141 (1%) Query: 3 IXDEPTTALDATVQIQILLLLRDLQKELGLSIVFVTHDIGAAAEVADRIAVMYAGKIIEQ 62 I DEPTTALD T+Q QIL ++ L ++ G +++++THD+ A +AD +AVMYAG+I+EQ Sbjct: 178 IADEPTTALDVTIQAQILSEVQKLARQHGTALIWITHDLSVVAGLADEVAVMYAGRIVEQ 237 Query: 63 GPAAELLTRPRHPYTLSLLKSRSHGAMQKGQRLETIGGAPPDLSNLPAGCAFAERCKYAV 122 G +L P HPYT L+ S ++G RL I G P+L +LP CAFA RC+ Sbjct: 238 GSVDAVLDAPLHPYTQGLIGSLPSNN-RRGARLRQIPGMTPNLLHLPPTCAFAARCERLS 296 Query: 123 AECSSVQPRDELLSPGHVVSC 143 +C E L P H V C Sbjct: 297 QQCLVAPAISEPL-PAHRVRC 316 >gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 617 Score = 94.0 bits (232), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 51/109 (46%), Positives = 68/109 (62%), Gaps = 6/109 (5%) Query: 3 IXDEPTTALDATVQIQILLLLRDLQKELGLSIVFVTHDIGAAAEVADRIAVMYAGKIIEQ 62 I DEPTTALD T+Q QIL L+R LQ+E+ + ++F+THD+G AEVADR+ VM G+ +E+ Sbjct: 186 IADEPTTALDVTIQAQILQLIRSLQQEMQMGVIFITHDMGVVAEVADRVVVMCRGEKVEE 245 Query: 63 GPAAELLTRPRHPYTLSLLKSRSH-GAMQKGQRLETIGGAP-----PDL 105 L P HPYT SLL + G+M+ + G AP PDL Sbjct: 246 NAVNPLFAAPAHPYTQSLLAAVPRLGSMRGTDKPLRFGIAPQAEARPDL 294 Score = 85.5 bits (210), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 36/79 (45%), Positives = 54/79 (68%) Query: 3 IXDEPTTALDATVQIQILLLLRDLQKELGLSIVFVTHDIGAAAEVADRIAVMYAGKIIEQ 62 I DE +ALD ++Q QI+ L+ DLQ ELG+S +F++HD+ ++ R+AVMY G+I+E Sbjct: 483 IADESVSALDVSIQAQIVNLMLDLQAELGISFIFISHDMAVVERISHRVAVMYLGQIVEI 542 Query: 63 GPAAELLTRPRHPYTLSLL 81 GP + P+HPYT L+ Sbjct: 543 GPRRAIFENPQHPYTRKLM 561 >gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPase [Herbaspirillum seropedicae SmR1] Length = 529 Score = 90.5 bits (223), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 40/82 (48%), Positives = 55/82 (67%) Query: 3 IXDEPTTALDATVQIQILLLLRDLQKELGLSIVFVTHDIGAAAEVADRIAVMYAGKIIEQ 62 I DEPTTALD T+Q+QIL LL LQ+E ++++ ++HD+ ADR+ VM GK++E Sbjct: 172 IADEPTTALDVTIQVQILALLNQLQREENMAVLIISHDLNLVRHFADRVGVMEKGKLVES 231 Query: 63 GPAAELLTRPRHPYTLSLLKSR 84 AEL P+ PYT LL+SR Sbjct: 232 ASVAELFANPQQPYTRKLLQSR 253 Score = 75.5 bits (184), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 35/77 (45%), Positives = 53/77 (68%) Query: 5 DEPTTALDATVQIQILLLLRDLQKELGLSIVFVTHDIGAAAEVADRIAVMYAGKIIEQGP 64 DEPT+ALD TVQ Q+L LL +LQ+ GL+ +F+THD+ +A ++ VM GK++E G Sbjct: 443 DEPTSALDVTVQQQVLQLLAELQRRHGLAYLFITHDLAVVQAMAHQVIVMKDGKVVESGA 502 Query: 65 AAELLTRPRHPYTLSLL 81 A++L +P+ YT L+ Sbjct: 503 TAQVLQQPQQEYTRRLV 519 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 469,971 Number of extensions: 16972 Number of successful extensions: 174 Number of sequences better than 1.0e-08: 23 Number of HSP's gapped: 186 Number of HSP's successfully gapped: 26 Length of query: 170 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 91 Effective length of database: 1,245,805 Effective search space: 113368255 Effective search space used: 113368255 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)