BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0124.p
         (185 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313822|ref|YP_003777914.1| N-carbamoyl-L-amino acid amidoh...   261   3e-71
gi|300312555|ref|YP_003776647.1| bifunctional OHCU decarboxylase...   170   6e-44
gi|300313936|ref|YP_003778028.1| amidohydrolase [Herbaspirillum ...    82   2e-17

>gi|300313822|ref|YP_003777914.1| N-carbamoyl-L-amino acid
           amidohydrolase [Herbaspirillum seropedicae SmR1]
          Length = 417

 Score =  261 bits (666), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 126/185 (68%), Positives = 150/185 (81%)

Query: 1   VKTVPEQYRSCGQEIMRRADVLAVHTEAPGMMTRTYLTPVHHAAAQQLSEWMSAAGMQVR 60
           +K VPE ++  G++ M+ A  LA HTE+PGM+TRTYLTP H AAA  L+ WM  AGM+VR
Sbjct: 1   MKAVPEPFQQAGRQAMQWAQQLAQHTESPGMLTRTYLTPQHQAAAAALARWMEEAGMRVR 60

Query: 61  RDDAGNVIGRYEATPGHENAPALATGSHFDTVRNGGKYDGNLGILLPVSCIGAWHRAGRR 120
           RD+AGNVIGRYEA PGHE+AP+  TGSHFDTVRNGG YDGNLGI+LP++CI  WHR G+R
Sbjct: 61  RDNAGNVIGRYEAAPGHESAPSFVTGSHFDTVRNGGWYDGNLGIVLPLACIARWHRQGQR 120

Query: 121 FPFPIEVIGFAEEEGVRFKATLLGSRAVAGTFDKGVLDNLDEEGNSMRDVMRAAGFNPDR 180
           F FPIEVIGFAEEEGVRFKATLLGSR VAGTFD+ VL+N D +G +MR  +RAAG +PD 
Sbjct: 121 FAFPIEVIGFAEEEGVRFKATLLGSRTVAGTFDQAVLENRDSDGVTMRAAIRAAGLDPDG 180

Query: 181 LDASA 185
           + A A
Sbjct: 181 IAADA 185


>gi|300312555|ref|YP_003776647.1| bifunctional OHCU
           decarboxylase/N-carbamoyl-L-amino acid amidohydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 587

 Score =  170 bits (431), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 83/168 (49%), Positives = 111/168 (66%), Gaps = 2/168 (1%)

Query: 10  SCGQEIMRRADVLAVHTEAPGMMTRTYLTPVHHAAAQQLSEWMSAAGMQVRRDDAGNVIG 69
           + G  +M+ A+ +   +E  G +T TYLT  H   A Q+++WM  AGMQV  D  GNV+G
Sbjct: 178 TLGATVMQWAEEIGALSEEEGALTCTYLTETHQRTAAQIAQWMREAGMQVHIDAVGNVVG 237

Query: 70  RYEATPGHENAPALATGSHFDTVRNGGKYDGNLGILLPVSCIGAWHRAGRRFPFPIEVIG 129
           RY++   H  A  L TGSH+DTVRNGGKYDG  GILLP++ +   H  G   PF +EVIG
Sbjct: 238 RYQSP--HPQAKTLLTGSHYDTVRNGGKYDGREGILLPIAVVKYLHERGETLPFHLEVIG 295

Query: 130 FAEEEGVRFKATLLGSRAVAGTFDKGVLDNLDEEGNSMRDVMRAAGFN 177
           F+EEEGVRFK+T LGS A+ G FD  +LD  D+E  +MR+++  AG +
Sbjct: 296 FSEEEGVRFKSTFLGSNAITGHFDMALLDLRDKEDVTMRELIIQAGHD 343


>gi|300313936|ref|YP_003778028.1| amidohydrolase [Herbaspirillum
           seropedicae SmR1]
          Length = 419

 Score = 82.4 bits (202), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 72/151 (47%), Gaps = 5/151 (3%)

Query: 28  APGMMTRTYLTPVHHAAAQQLSEWMSAAGMQVRRDDAGNVIGRYEATPGHENA-PALATG 86
           A G + R  LT +       +S W  A GM V  D  GN+  R    PG  NA P + TG
Sbjct: 31  AKGGVCRLALTDLDKQGRDLVSSWARAEGMSVVVDQIGNIFMR---RPGRNNALPPVMTG 87

Query: 87  SHFDTVRNGGKYDGNLGILLPVSCIGAWHRAGRRFPFPIEVIGFAEEEGVRFKATLLGSR 146
           SH DT   GGK+DGN G+L  +  +   ++   +   PIEV  +  EEG RF   ++GS 
Sbjct: 88  SHIDTQPTGGKFDGNYGVLAGIEVVRTLNQHNIQTEAPIEVAVWTNEEGSRFVPVMMGSG 147

Query: 147 AVAGTFD-KGVLDNLDEEGNSMRDVMRAAGF 176
              G F      +  D EG  +RD +   G+
Sbjct: 148 VFCGAFTLDHAYNATDVEGKKVRDELERIGY 178


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 674,417
Number of extensions: 31044
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 3
Length of query: 185
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,241,070
Effective search space: 130312350
Effective search space used: 130312350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)