BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0123.p (426 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313823|ref|YP_003777915.1| C4-dicarboxylate transport tran... 690 0.0 gi|300311930|ref|YP_003776022.1| C4-dicarboxylate transport tran... 395 e-111 gi|300313118|ref|YP_003777210.1| proton glutamate symport protei... 227 1e-60 >gi|300313823|ref|YP_003777915.1| C4-dicarboxylate transport transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 445 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/419 (86%), Positives = 393/419 (93%) Query: 1 VNRFFKSLFGQVVIALIAGIVVGLFYPDFGQSLKPLGDGFIKLIKMIIPVIVFCVVVQGI 60 V++ FKSLFGQVV+ALI GI++GLF+PDFGQ+LKPLGDGFIKLIKMIIPVIVFCVVVQGI Sbjct: 2 VSKLFKSLFGQVVLALIGGIIIGLFWPDFGQNLKPLGDGFIKLIKMIIPVIVFCVVVQGI 61 Query: 61 CGASDLKKVGSVGIKAIIYFEIVTTIALLLGLLLAFVFQPGAGMNIDPTNLDASGLSSYV 120 CGASDLKKVGSVG+KAIIYFE+VTTIALLLGL+LA V QPGAGMNIDP+NLDAS LS Y+ Sbjct: 62 CGASDLKKVGSVGVKAIIYFEVVTTIALLLGLVLALVVQPGAGMNIDPSNLDASSLSGYM 121 Query: 121 ETASKVKGTSFADFIMKLIPGTIVSAFTSGDVLQVLLISVIFGCALLLIGDKGQPTVSLI 180 A KVK T FA+FIMKLIP T VSAFTSGDVLQVLLISV FGCALLLIG+KG P V+L+ Sbjct: 122 ANAGKVKETGFAEFIMKLIPATAVSAFTSGDVLQVLLISVTFGCALLLIGEKGAPVVALV 181 Query: 181 ASLSEAFFKCMAFIIRLAPLGVFGAIAFTVGRYGIGSLKQLGMLVLLFYGAVIFFVVVVL 240 ASLS+AFFKCM+F IRLAPLGV GAIAFTVG+YGIGSLKQL +LVLLFYGAVIFFV+VVL Sbjct: 182 ASLSDAFFKCMSFFIRLAPLGVLGAIAFTVGKYGIGSLKQLALLVLLFYGAVIFFVLVVL 241 Query: 241 GAILRTSGLSIFKLIAYLREELIVVLATASSDSVLPQIMRKLEHMGIKKSTVGLVIPTGY 300 G ILR SGLSIFKLI YLREEL+VVLAT SSDSVLPQIM+KLEHMGIKKSTVGLVIPTGY Sbjct: 242 GGILRASGLSIFKLIRYLREELVVVLATTSSDSVLPQIMKKLEHMGIKKSTVGLVIPTGY 301 Query: 301 SFNLDAFSIYLTMAAVFIAQATNTHLAMGDLLMILAIALITSKGAHGVPGSAIVILAATL 360 SFNLDAFSIYLTMAA+FIAQATNTHL+MGDL ILAIAL+TSKGAHGVPGSAIVILAATL Sbjct: 302 SFNLDAFSIYLTMAALFIAQATNTHLSMGDLAAILAIALVTSKGAHGVPGSAIVILAATL 361 Query: 361 TTIPAIPVVGLVLVLSIDWFIGIARALGNLLGNCVATVVVATWEKDIDKTRARAVLNGE 419 TTIPAIPVVGLVLVLSIDWFIGIARALGNLLGNCVATVV+A+WE+DIDK RARAVLNGE Sbjct: 362 TTIPAIPVVGLVLVLSIDWFIGIARALGNLLGNCVATVVIASWERDIDKVRARAVLNGE 420 >gi|300311930|ref|YP_003776022.1| C4-dicarboxylate transport transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 441 Score = 395 bits (1016), Expect = e-111, Method: Compositional matrix adjust. Identities = 213/415 (51%), Positives = 294/415 (70%), Gaps = 3/415 (0%) Query: 5 FKSLFGQVVIALIAGIVVGLFYPDFGQSLKPLGDGFIKLIKMIIPVIVFCVVVQGICGAS 64 +KSL+ QV++A++ GI++G FYP G+++KPLGDGF+KLIKMII ++FC VV GI G Sbjct: 9 YKSLYFQVLVAIVIGILLGHFYPSTGEAMKPLGDGFVKLIKMIIAPVIFCTVVIGIAGME 68 Query: 65 DLKKVGSVGIKAIIYFEIVTTIALLLGLLLAFVFQPGAGMNIDPTNLDASGLSSYVETAS 124 D+KKVG G A++YFE+V+T+AL++GLLL QPG GMN+DP +LD +++Y Sbjct: 69 DMKKVGKTGGLALLYFEVVSTVALIIGLLLVNFLQPGVGMNVDPASLDTKSIAAYTAPG- 127 Query: 125 KVKGTSFADFIMKLIPGTIVSAFTSGDVLQVLLISVIFGCALLLIGDKGQPTVSLIASLS 184 K S DF++ +IP ++V AF GDVLQVLL++V+FG AL G +G I +S Sbjct: 128 --KMGSVTDFVLGIIPTSMVDAFAKGDVLQVLLVAVLFGFALHKFGGRGTLVFDFIEKIS 185 Query: 185 EAFFKCMAFIIRLAPLGVFGAIAFTVGRYGIGSLKQLGMLVLLFYGAVIFFVVVVLGAIL 244 F + I+++AP+G FGA++FT+G+YG+GSL L L+ FY + F+ VVLG I Sbjct: 186 HVLFSVVGAIMKVAPIGAFGAMSFTIGKYGVGSLFSLAKLMGTFYLTCLLFIFVVLGIIT 245 Query: 245 RTSGLSIFKLIAYLREELIVVLATASSDSVLPQIMRKLEHMGIKKSTVGLVIPTGYSFNL 304 R G SI+K + Y++EEL++VL T+SS+SVLP+++ K+E+ G KK+ VGLVIPTGYSFNL Sbjct: 246 RLHGFSIWKFVKYIKEELLIVLGTSSSESVLPRMLAKMENAGAKKTVVGLVIPTGYSFNL 305 Query: 305 DAFSIYLTMAAVFIAQATNTHLAMGDLLMILAIALITSKGAHGVPGSAIVILAATLTTIP 364 D +IYLTMAAVFIAQATNT + L +L + L+TSKGA G+ GS ++LAATL+ + Sbjct: 306 DGTAIYLTMAAVFIAQATNTPMTFVQELTLLGVLLLTSKGAAGITGSGFIVLAATLSAVG 365 Query: 365 AIPVVGLVLVLSIDWFIGIARALGNLLGNCVATVVVATWEKDIDKTRARAVLNGE 419 +PV GL L+L ID F+ ARAL N +GN VAT+VVA W ++D R VLN E Sbjct: 366 HVPVAGLALILGIDRFMSEARALTNTIGNGVATLVVAKWSGELDSERLTKVLNNE 420 >gi|300313118|ref|YP_003777210.1| proton glutamate symport protein [Herbaspirillum seropedicae SmR1] Length = 431 Score = 227 bits (579), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 136/399 (34%), Positives = 230/399 (57%), Gaps = 18/399 (4%) Query: 15 ALIAGIVVGLF---YPDFGQSLKPLG------DGFIKLIKMIIPVIVFCVVVQGICGASD 65 A++ GI+VG + D Q+ + G D F++LIKM+I +VF +V GI D Sbjct: 14 AMLLGILVGYLIFSHNDKAQAKELAGYISIASDLFLRLIKMVIAPLVFSTLVVGIAHMGD 73 Query: 66 LKKVGSVGIKAIIYFEIVTTIALLLGLLLAFVFQPGAGMNIDPTNLDASGLSSYVETASK 125 K VG + K++ +F I + ++L LG+++A + QPGAG+ + + +GL++ T Sbjct: 74 AKSVGRIFGKSLAWFFIASLVSLALGMIMANLLQPGAGVALPSPDAAGAGLATSKFTVK- 132 Query: 126 VKGTSFADFIMKLIPGTIVSAFTSGDVLQVLLISVIFGCALLLIGDKGQPTVSLIASLSE 185 +F L+P +IV A +VLQV++ S+ FG AL +G++G+ +++I LS Sbjct: 133 -------EFFNHLVPKSIVEAMAQNEVLQVVVFSMFFGIALASLGERGKHLLAVIDDLSH 185 Query: 186 AFFKCMAFIIRLAPLGVFGAIAFTVGRYGIGSLKQLGMLVLLFYGAVIFFVVVVLGAILR 245 K ++++ AP+ VF A+A TV G+ L + + FY +++ V+++ Sbjct: 186 TMLKITVYVMKFAPVAVFAAMAATVAVNGLEILVSFAVFMRDFYFSLVLLWVILIAVGFI 245 Query: 246 TSGLSIFKLIAYLREELIVVLATASSDSVLPQIMRKLEHMGIKKSTVGLVIPTGYSFNLD 305 IF L+A ++E ++ ATASS++ P+++ L+ G+K+ V+P GYSFNLD Sbjct: 246 FLKKRIFHLLALIKEAFLLAFATASSEAAYPKLLDALDRFGVKRKISSFVMPMGYSFNLD 305 Query: 306 AFSIYLTMAAVFIAQATNTHLAMGDLLMILAIALITSKGAHGVPGSAIVILAATLTTIPA 365 IY T A +FIAQA H+ + + ++ + ++TSKG GVP +++V++AATL Sbjct: 306 GSMIYCTFATLFIAQAYGIHMPISTQITMMLVLMLTSKGIAGVPRASLVVIAATLHQFN- 364 Query: 366 IPVVGLVLVLSIDWFIGIARALGNLLGNCVATVVVATWE 404 IP GL+++L ID F+ + R+ N +GN +A+ VVA WE Sbjct: 365 IPEAGLLVILGIDTFLDMGRSATNAVGNSIASAVVAKWE 403 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.328 0.144 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,174,405 Number of extensions: 46622 Number of successful extensions: 279 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 275 Number of HSP's successfully gapped: 3 Length of query: 426 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 338 Effective length of database: 1,203,190 Effective search space: 406678220 Effective search space used: 406678220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 132 (55.5 bits)