BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0122.p (257 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313824|ref|YP_003777916.1| GntR family transcription regul... 347 6e-97 gi|300313534|ref|YP_003777626.1| GntR family transcription regul... 129 2e-31 gi|300313540|ref|YP_003777632.1| transcription regulator protein... 109 2e-25 gi|300311999|ref|YP_003776091.1| GntR family transcription regul... 68 8e-13 gi|300311599|ref|YP_003775691.1| transcription regulator protein... 67 2e-12 >gi|300313824|ref|YP_003777916.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 228 Score = 347 bits (889), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 177/227 (77%), Positives = 196/227 (86%) Query: 30 MTEAVLPPDSSEAIARDITIAIAEQRLPPGAKLREEALARVYQVSRTKIRAALVMLAKDK 89 MT++ PDSS+AIA DI IA QRLPPGAKL EEALARVYQVSRTKIRAALVMLAKDK Sbjct: 1 MTDSAPAPDSSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDK 60 Query: 90 LIDLIPDKGAFVSKPTVEETRNIFFVRRTLEAAMVREFVARATAADYAVLEAHLREERRA 149 L+DLIPDKGAFVSKPTVEETRNIFFVRRTLE+AMVREFVARAT DYA LEAHL ER+A Sbjct: 61 LVDLIPDKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQA 120 Query: 150 IEENNPQVRSTLLSDFHILLANIVGNEVLTDILVKLAGRSSLITMLYQSTRDAICSTEEH 209 + ++N QVRSTLLSDFHILLA IVGN+VLTDIL KLAGRS+LITMLYQSTRDA CS+EEH Sbjct: 121 VSDDNMQVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEH 180 Query: 210 CDFIAAAKAGKVEEAVELMLHHLHHVEQALEFDTPSDPKRDLAKELL 256 FIAAA+AG E A+ELM HHL HVEQAL F+ + P++DL +ELL Sbjct: 181 RAFIAAARAGDTERAMELMEHHLLHVEQALAFEPKAGPRKDLLRELL 227 >gi|300313534|ref|YP_003777626.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 129 bits (325), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 119/219 (54%), Gaps = 3/219 (1%) Query: 39 SSEAIARDITIAIAEQRLPPGAKLREEALARVYQVSRTKIRAALVMLAKDKLIDLIPDKG 98 SS IA IT AI ++L PG +L E+ LA +++VSRT++R AL L ++ + +G Sbjct: 9 SSSQIAVRITEAILAKQLAPGTRLGEQQLADLFKVSRTQVREALTHLMARGIVTVSARRG 68 Query: 99 AFVSKPTVEETRNIFFVRRTLEAAMVREFVARATAADYAV--LEAHLREERRAIEENNPQ 156 FV +PT + R F RR +E ++R+ R D A+ L H+ E AI + Sbjct: 69 WFVIEPTPAQAREAFEARRVIELGLLRQARLRPVG-DTAIGQLREHIAREEAAIAGADVG 127 Query: 157 VRSTLLSDFHILLANIVGNEVLTDILVKLAGRSSLITMLYQSTRDAICSTEEHCDFIAAA 216 RS LL DFH+ LA +GN +L + L L R++L ML+QS+ A S EH + A Sbjct: 128 ARSYLLGDFHVCLAECLGNSLLAETLRDLTARTTLTAMLHQSSEQAEDSCSEHVLIVEAL 187 Query: 217 KAGKVEEAVELMLHHLHHVEQALEFDTPSDPKRDLAKEL 255 + G +E+A +LM HL HVE L SDP L + L Sbjct: 188 ERGDLEQAEQLMHDHLQHVESGLNQVRSSDPLEPLRQAL 226 >gi|300313540|ref|YP_003777632.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 109 bits (272), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 110/211 (52%), Gaps = 2/211 (0%) Query: 41 EAIARDITIAIAEQRLPPGAKLREEALARVYQVSRTKIRAALVMLAKDKLIDLIPDKGAF 100 E + +DI AI E RLPP KL E+ L ++Y +R +R L LA + ++DL ++GAF Sbjct: 29 ERMYQDIYDAIMEHRLPPRTKLTEQTLCQIYDTARHTVRKVLARLAAEGMVDLEANRGAF 88 Query: 101 VSKPTVEETRNIFFVRRTLEAAMVREFVARATAADYAVLEAHLREERRAIEENNPQVRST 160 ++ P+ E R++F +R LE A++ + A A L + EER + Sbjct: 89 IASPSPAEVRDMFELRNILEHAVLEKLGHTAGTRQIAGLRRMVEEERDCYLNGDRPRWIR 148 Query: 161 LLSDFHILLANIVGNEVLTDILVKLAGRSSLITMLYQSTRDAICSTEEHCDFIAAAKAGK 220 L + FH+ LA + GN +L + L KL R++L+ ++ CS +EH + A + G Sbjct: 149 LSAQFHLALAELTGNALLVETLRKLVSRTTLMIAKTEAPGHNACSFDEHETVLEALEKGD 208 Query: 221 VEEAVELMLHHLHHVEQALEFDTPSDPKRDL 251 ++ A M HHLH E + D +D + DL Sbjct: 209 IKAAQAHMAHHLHLCEDRVRPD--ADDQFDL 237 >gi|300311999|ref|YP_003776091.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 67.8 bits (164), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 93/198 (46%), Gaps = 1/198 (0%) Query: 36 PPDSSEAIARDITIAIAEQRLPPGAKLREEALARVYQVSRTKIRAALVMLAKDKLIDLIP 95 P +EA+ I IA +L PG L E +LA + VSRT IR AL+ LA ++++ P Sbjct: 4 PKTRAEALRESIEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVEMRP 63 Query: 96 DKGAFVSKPTVEETRNIFFVRRTLEAAMVREFVARATAADYAVLEAHLREERRAIEENNP 155 +GA V++ ++ +F V EA R R T A++A L A + + A + N+P Sbjct: 64 RRGAIVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARDANDP 123 Query: 156 QVRSTLLSDFHILLANIVGNEVLTDILVKLAGRSSLITMLYQSTRDAICST-EEHCDFIA 214 L FH + N L D L R L RD + S+ +EH + Sbjct: 124 DAYFYLNEAFHDHIYAGSHNGFLADQARALHRRLRPYRRLQLRVRDRLKSSFDEHQAVVD 183 Query: 215 AAKAGKVEEAVELMLHHL 232 A +G E+ V+L+ H+ Sbjct: 184 AIISGDAEKTVDLLREHI 201 >gi|300311599|ref|YP_003775691.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 66.6 bits (161), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 6/148 (4%) Query: 40 SEAIARDITIAIAEQRLPPGAKLREEALARVYQVSRTKIRAALVMLAKDKLIDLIPDKGA 99 SE + R I AI + + PG+K+ E LAR Y +SR +R A+ L L+ +P GA Sbjct: 18 SEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVPHVGA 77 Query: 100 FVSKPTVEETRNIFFVRRTLEAAMVREFVARATAADY----AVLEAHLREERRAIEENNP 155 V T+E +F +R +LE R R + A+ VL+ H ++E A + Sbjct: 78 RVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLDTHEKDE--AFQAGRG 135 Query: 156 QVRSTLLSDFHILLANIVGNEVLTDILV 183 + DFH + GN++LT IL Sbjct: 136 YYQQEGDYDFHYKIIQASGNQILTRILC 163 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.132 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 635,866 Number of extensions: 20994 Number of successful extensions: 106 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 109 Number of HSP's successfully gapped: 6 Length of query: 257 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 174 Effective length of database: 1,226,865 Effective search space: 213474510 Effective search space used: 213474510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)