BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0121.p (285 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 230 8e-62 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 228 5e-61 gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A... 214 6e-57 gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate A... 209 3e-55 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 202 4e-53 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 230 bits (587), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 113/215 (52%), Positives = 154/215 (71%), Gaps = 1/215 (0%) Query: 19 IEIRDLSVRFA-QGGQSVQAVQGVTLDVRSGEFVSVIGPSGCGKSTLLNLVAGFVAPTEG 77 +++ + SV F+ + Q V A+ V+LD+ +G FV +G SGCGKSTLLN +AGF+ +EG Sbjct: 2 LKVENASVYFSGRDKQRVHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEG 61 Query: 78 SVSLDGKAITGPGADRGVVFQQYSLFPWKNVLANVEFGLKLQGIDKYARQQRSRQLLQQA 137 +SLDG+ ++GPGA+RGVVFQ+ SL PWK+V NV GLK G+ K ++R+++LL+ Sbjct: 62 RISLDGQPVSGPGAERGVVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRLV 121 Query: 138 GLAGFEKFYPAQLSGGMKQRVGIIRALAANPRILLMDEPFGALDTQTRTIMQQLLTDLWQ 197 GL F + P +LSGGM+QRVG+ RALA NP+ILLMDEPFGALD+ TR MQ+LL +W Sbjct: 122 GLQDFARAAPYELSGGMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWA 181 Query: 198 TLGISVLFITHDIDEAIFLSDRIYVMTARPGMVKA 232 G V FITH I+EA+FL + VM+ RPG + A Sbjct: 182 RTGKQVFFITHSIEEALFLGTEVIVMSPRPGRIVA 216 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 228 bits (580), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 120/261 (45%), Positives = 162/261 (62%), Gaps = 3/261 (1%) Query: 19 IEIRDLSVRFAQGGQSVQAVQGVTLDVRSGEFVSVIGPSGCGKSTLLNLVAGFVAPTEGS 78 I I+ + F + V A++ + LD+ G+FV ++GPSGCGKSTLLN +AGF P+ G Sbjct: 10 IRIQGVHKVFKTDDREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGQ 69 Query: 79 VSLDGKAITGPGADRGVVFQQYSLFPWKNVLANVEFGLKLQGIDKYARQQRSRQLLQQAG 138 + D K ++ PG DRG+VFQ+Y+LFPW V NV FGL+++G K QR QLL + G Sbjct: 70 ILTDDKVVSEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLLDKLG 129 Query: 139 LAGFEKFYPAQLSGGMKQRVGIIRALAANPRILLMDEPFGALDTQTRTIMQQLLTDLWQT 198 L F +P LSGGM+QRV I R LA + I+LMDEPFGALD TR +Q L +W Sbjct: 130 LIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWDE 189 Query: 199 LGISVLFITHDIDEAIFLSDRIYVMTARPGMVKAVVPVALKRPRLADVVLSKEFLDIRAR 258 +++F+TH I+EAI+L+DRI VMT RPG VK + V L PRL D EF ++ Sbjct: 190 FRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNL--PRLRDPA-DPEFNALKRE 246 Query: 259 LHGLIADESLQSFRSESIAPA 279 L L+ +E + +E A A Sbjct: 247 LGQLVMEEQQRHHNAEMKAAA 267 >gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 275 Score = 214 bits (545), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 108/250 (43%), Positives = 160/250 (64%), Gaps = 2/250 (0%) Query: 19 IEIRDLSVRF-AQGGQSVQAVQGVTLDVRSGEFVSVIGPSGCGKSTLLNLVAGFVAPTEG 77 IE+R++S RF G++ A++ ++ V GEFV+V+GP+GCGKST L+L+ G + PT G Sbjct: 22 IELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKPTLG 81 Query: 78 SVSLDGKAITGPGADRGVVFQQYSLFPWKNVLANVEFGLKLQGIDKYARQQRSRQLLQQA 137 V + G+ + G G VFQ ++FPW++V NV G +G K + + +++ Sbjct: 82 EVRVMGQPVNGIDPRIGFVFQNDAVFPWRSVRENVAAGPLFRGQPKAQAHALADEWIRRV 141 Query: 138 GLAGFEKFYPAQLSGGMKQRVGIIRALAANPRILLMDEPFGALDTQTRTIMQQLLTDLWQ 197 GL F YP QLSGGM++RV + + +P ILLMDEPF ALD QTRT+MQ L LW Sbjct: 142 GLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDELLRLWS 201 Query: 198 TLGISVLFITHDIDEAIFLSDRIYVMTARPGMVKAVVPVALKRPR-LADVVLSKEFLDIR 256 SV+F+THD++EAI L+D++YV+TARP +K+V P+ L RPR + +V + F+DI Sbjct: 202 AHSGSVVFVTHDLEEAIALADKVYVLTARPATLKSVYPIDLPRPRVMEEVRYEQRFIDIS 261 Query: 257 ARLHGLIADE 266 R+ + +E Sbjct: 262 RRIWADLREE 271 >gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 265 Score = 209 bits (531), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 104/205 (50%), Positives = 140/205 (68%), Gaps = 3/205 (1%) Query: 40 GVTLDVRSGEFVSVIGPSGCGKSTLLNLVAGFVAPTEGSVSLDGKAITGPGADRGVVFQQ 99 G+ LD+R+GEFV ++GPSGCGKSTLLN +AGF G +S+DGK + GPG DRGVVFQ Sbjct: 24 GIDLDIRAGEFVCLLGPSGCGKSTLLNAIAGF-QDVSGEISVDGKRVKGPGLDRGVVFQS 82 Query: 100 Y-SLFPWKNVLANVEFGLKLQGIDKYARQQRSRQLLQQAGLAGFEKFYPAQLSGGMKQRV 158 +LFPW +V NVE+GLKL+G+ R+ + + + GL +PA+LSGGM+QR Sbjct: 83 SEALFPWLSVRENVEYGLKLRGVASAERRAAAERYVSLVGLKHAIDKFPAELSGGMRQRA 142 Query: 159 GIIRALAANPRILLMDEPFGALDTQTRTIMQQLLTDLWQTLGISVLFITHDIDEAIFLSD 218 I R L P ++LMDEPFGALD QTR ++Q L +W++ G +++F+THDI EAI L+D Sbjct: 143 QIARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIWKSTGCTIVFVTHDIWEAILLAD 202 Query: 219 RIYVMTARP-GMVKAVVPVALKRPR 242 R+ MTA P +K + V L PR Sbjct: 203 RVVTMTAGPRAHIKTIEEVHLPHPR 227 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 202 bits (513), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 90/197 (45%), Positives = 133/197 (67%) Query: 34 SVQAVQGVTLDVRSGEFVSVIGPSGCGKSTLLNLVAGFVAPTEGSVSLDGKAITGPGADR 93 + ++ T ++ SGE V+++GPSGCGKSTLL++ AG P+ GSV+ DG+ I GP +R Sbjct: 14 DLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVAGDGQTIRGPHPER 73 Query: 94 GVVFQQYSLFPWKNVLANVEFGLKLQGIDKYARQQRSRQLLQQAGLAGFEKFYPAQLSGG 153 ++FQ+ +L+PW + NV L+ Q +DK +++R L+ L GFE +YP Q+SGG Sbjct: 74 TLMFQENALYPWLTLQQNVALALEFQSVDKKKAAEQARVWLENVKLKGFEHYYPHQVSGG 133 Query: 154 MKQRVGIIRALAANPRILLMDEPFGALDTQTRTIMQQLLTDLWQTLGISVLFITHDIDEA 213 M+QR + RA + P+ LL+DEPFGALD TR +Q L DL + G +V+ +THD+DEA Sbjct: 134 MRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQGPTVVLVTHDVDEA 193 Query: 214 IFLSDRIYVMTARPGMV 230 +FL+DRI+V + RP V Sbjct: 194 LFLADRIFVFSPRPAKV 210 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.138 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 816,544 Number of extensions: 30661 Number of successful extensions: 481 Number of sequences better than 1.0e-08: 126 Number of HSP's gapped: 301 Number of HSP's successfully gapped: 135 Length of query: 285 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 201 Effective length of database: 1,222,130 Effective search space: 245648130 Effective search space used: 245648130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)