BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0120.p (327 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporte... 76 3e-15 gi|300309715|ref|YP_003773807.1| nitrate/sulfonate/bicarbonate A... 75 6e-15 gi|300310915|ref|YP_003775007.1| alkanesulfonates ABC transporte... 70 2e-13 gi|300311646|ref|YP_003775738.1| taurine ABC transporter peripla... 69 4e-13 gi|300310819|ref|YP_003774911.1| nitrate/sulfonate/bicarbonate A... 65 6e-12 >gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 327 Score = 76.3 bits (186), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 91/208 (43%), Gaps = 3/208 (1%) Query: 52 FEKYGLDVAVNNFTSGRQALETVLGGGADIATTAEAPITAAALARQKIALLARMEYSDDK 111 + G++V F +G Q LE + G D EAP A A A + D Sbjct: 69 LQPLGVEVKWAEFAAGPQLLEALNVGSVDFGYVGEAPPVFAQAAGADFVYTAYEIPTPDA 128 Query: 112 T--LVNKSAGINSTADLKGKRIGYTVGTGGEIYTLTLLRKAGLTRNDVTLVNLRPQDMVA 169 LV K++ I S A+LKGK+I + G+ + LL+KAGL +D+ V L P D A Sbjct: 129 EGLLVQKNSPIKSVAELKGKKIAFNKGSDVHWLVVALLKKAGLQYSDIQPVYLAPADARA 188 Query: 170 ALSTNSIDAYNTWEPHISNGKKALGDKVRELDTKGVYAETFNLVVTEEYLSKNEKTVTAF 229 A ++DA+ W+P + +K +G + V F L + +KN + Sbjct: 189 AFERGAVDAWAIWDPFQAAAEKQVGARRLATGVGAVNHHQFFL-SARPFAAKNPQVEKIL 247 Query: 230 LRAILDAERFLKANRDESITIIAAATGM 257 L I +++ + ++ +A G+ Sbjct: 248 LEEISREGEWVRTHTAQAAAQLAPIQGL 275 >gi|300309715|ref|YP_003773807.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 75.1 bits (183), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 102/220 (46%), Gaps = 4/220 (1%) Query: 21 SGFTHAADKIRLAQNLAPISGLAIIAKQKNLFEKYGLDVAVNNFTSGRQALETVLGGGAD 80 S +HAAD + NL + ++ K + K G+ V F G ++ +L G D Sbjct: 17 SAASHAADDVIRLGNLK-FAHYGAVSYIKEIAPKCGIKVDEKVFAKGPDVMQGILAGELD 75 Query: 81 IATTA-EAPITAAALARQKIALLARMEYSDDKTLVNKSAGINSTADLKGKRIGYTVGTGG 139 + TTA EA I+ A I ++A + + K +GI S DLKGK++G T G Sbjct: 76 VGTTASEAAISGRANG-APIYVVAGFAKGGARLVAGKDSGIKSVKDLKGKKVGVTRGGIH 134 Query: 140 EIYTLTLLRKAGLTRNDVTLVNLRPQDMVAALSTNSIDAYNTWEPHISNG-KKALGDKVR 198 E+ L + GL+ DVT+V L D+ AL +IDA EP S K G +V Sbjct: 135 EVLLDAELGQNGLSAKDVTIVYLAFADLNQALLGKNIDAMMQSEPQSSQAINKGFGVEVM 194 Query: 199 ELDTKGVYAETFNLVVTEEYLSKNEKTVTAFLRAILDAER 238 + + +V+TE++ ++ F+R L+A + Sbjct: 195 KPYDTPIGEPYRTMVMTEKFYNEKRPLAEKFMRCFLEATK 234 >gi|300310915|ref|YP_003775007.1| alkanesulfonates ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 336 Score = 70.1 bits (170), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 95/232 (40%), Gaps = 11/232 (4%) Query: 56 GLDVAVNNFTSGRQALETVLGGGADIATTAEAPITAAALARQKIALLARMEYSD--DKTL 113 G V F++G LE + G D EAP A A + + + L Sbjct: 79 GATVKWVEFSAGPVQLEALGAGSIDFGDVGEAPPIFAQAAGTPLVYVGATVPRPYVEAVL 138 Query: 114 VNKSAGINSTADLKGKRIGYTVGTGGEIYTLTLLRKAGLTRNDVTLVNLRPQDMVAALST 173 V + + LKGKRI G+ + + LL K GL DVT V L P D AA Sbjct: 139 VKDDSELQRPQQLKGKRIALNKGSNVHYFLVKLLEKHGLKYGDVTPVWLAPADARAAFER 198 Query: 174 NSIDAYNTWEPHISNGKKALGDKVREL-DTKGVYAETFNLVVTEEYLSKNEKTVTAFLRA 232 ++DA+ WEP+++ ++ L K R L D GV T +Y + + L Sbjct: 199 GAVDAWAIWEPYLAAAQQGL--KARILADADGVVKNRAYYFSTRDYARDHADLLRIALEE 256 Query: 233 ILDAERFLKANRDESITIIAAATGMKKEELAEIWNDY------IFELVLDER 278 + + + +A DE + +A G+ + L + Y I +LDE+ Sbjct: 257 LGKIDAWAQARPDEYASELAGILGLPRSVLDVVVRRYHYGTLPITRAILDEQ 308 >gi|300311646|ref|YP_003775738.1| taurine ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 69.3 bits (168), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 82/188 (43%), Gaps = 5/188 (2%) Query: 52 FEK-YGLDVAVNNFTSGRQALETVLGGGADIATTAEAPITAAALARQ---KIALLARMEY 107 FEK G + F SG + + GG + +P+ AAA +R K LA + Sbjct: 49 FEKATGKKIDFRKFNSGADVIAAIAGGDVQVGYVGSSPLAAAA-SRGLDVKAFYLASISG 107 Query: 108 SDDKTLVNKSAGINSTADLKGKRIGYTVGTGGEIYTLTLLRKAGLTRNDVTLVNLRPQDM 167 +D+ +V AGINS ADLKGK++ + L L++ G T DV + + D+ Sbjct: 108 TDEALVVRNGAGINSVADLKGKKLAAAPVSTDHYQLLALIKSQGWTEKDVKVFAIPQPDI 167 Query: 168 VAALSTNSIDAYNTWEPHISNGKKALGDKVRELDTKGVYAETFNLVVTEEYLSKNEKTVT 227 VAA + ID W+P ++ KK V D A TF+ + +K Sbjct: 168 VAAYNRGDIDGGFVWDPALTELKKNGKVLVTSKDVADKGAPTFSAWIATGSFAKEHPEFL 227 Query: 228 AFLRAILD 235 A++D Sbjct: 228 KTFSAVID 235 >gi|300310819|ref|YP_003774911.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 65.5 bits (158), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 5/219 (2%) Query: 38 PISGLAIIAKQKNLFEKYGL-DVAVNNFTSGRQALETVLGGGADIATTAEAPITAAALAR 96 P+ +A + LF KYG +V+V ++T G +AL ++ ++ E P LAR Sbjct: 46 PVFTAFFVAANEKLFAKYGAPNVSVQSYTDGGEALNALVANQVNLGCAGE-PTHIVRLAR 104 Query: 97 QKIALLARMEYSDDKTLVNKSAGINSTADLKGKRIGYTVGTGGEIYTLTLLRKAGLTRND 156 ++ LA + Y L + +TAD K ++ G VG+ E T +R+ L + Sbjct: 105 AELRPLA-VTYQSRTYLKLVARKDIATAD-KIRKFGIVVGSVSEYVTGLTIRQLKLDASK 162 Query: 157 VTLVNLRPQDMVAALSTNSIDAYNTWEPHISNGKKALGDKVRELDTKGVYAETFNLVVTE 216 + +V P ++ A L+ IDAY WEP + G + G + G Y T L T Sbjct: 163 IEMVRSGPPELPALLARGDIDAYFVWEPWPTLGVQQGGHILMTCGDVG-YTSTLWLSATA 221 Query: 217 EYLSKNEKTVTAFLRAILDAERFLKANRDESITIIAAAT 255 +L+ N++ L+A+ +A + + + + A T Sbjct: 222 PWLAANKEVAGRILKALAEAAEITRKDPPRAAQSVQAIT 260 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.132 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 915,493 Number of extensions: 35065 Number of successful extensions: 142 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 140 Number of HSP's successfully gapped: 11 Length of query: 327 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 242 Effective length of database: 1,217,395 Effective search space: 294609590 Effective search space used: 294609590 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)