BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0119.p
         (88 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporte...    60   3e-11
gi|300310915|ref|YP_003775007.1| alkanesulfonates ABC transporte...    55   1e-09
gi|300311646|ref|YP_003775738.1| taurine ABC transporter peripla...    54   2e-09

>gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 327

 Score = 60.1 bits (144), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 43/72 (59%)

Query: 13  LVNKSAGINSTADLKGKRIGYTVGTGGEIYTLTLLRKAGLTRNDVTLVNLRPQDMVAALS 72
           LV K++ I S A+LKGK+I +  G+      + LL+KAGL  +D+  V L P D  AA  
Sbjct: 132 LVQKNSPIKSVAELKGKKIAFNKGSDVHWLVVALLKKAGLQYSDIQPVYLAPADARAAFE 191

Query: 73  TNSIDAYNTWEP 84
             ++DA+  W+P
Sbjct: 192 RGAVDAWAIWDP 203


>gi|300310915|ref|YP_003775007.1| alkanesulfonates ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 336

 Score = 54.7 bits (130), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 40/78 (51%)

Query: 10  DKTLVNKSAGINSTADLKGKRIGYTVGTGGEIYTLTLLRKAGLTRNDVTLVNLRPQDMVA 69
           +  LV   + +     LKGKRI    G+    + + LL K GL   DVT V L P D  A
Sbjct: 135 EAVLVKDDSELQRPQQLKGKRIALNKGSNVHYFLVKLLEKHGLKYGDVTPVWLAPADARA 194

Query: 70  ALSTNSIDAYNTWEPHIS 87
           A    ++DA+  WEP+++
Sbjct: 195 AFERGAVDAWAIWEPYLA 212


>gi|300311646|ref|YP_003775738.1| taurine ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 335

 Score = 53.9 bits (128), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 45/86 (52%)

Query: 2   LARMEYSDDKTLVNKSAGINSTADLKGKRIGYTVGTGGEIYTLTLLRKAGLTRNDVTLVN 61
           LA +  +D+  +V   AGINS ADLKGK++     +      L L++  G T  DV +  
Sbjct: 102 LASISGTDEALVVRNGAGINSVADLKGKKLAAAPVSTDHYQLLALIKSQGWTEKDVKVFA 161

Query: 62  LRPQDMVAALSTNSIDAYNTWEPHIS 87
           +   D+VAA +   ID    W+P ++
Sbjct: 162 IPQPDIVAAYNRGDIDGGFVWDPALT 187


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.131    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 256,495
Number of extensions: 8993
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 4
Length of query: 88
Length of database: 1,619,870
Length adjustment: 58
Effective length of query: 30
Effective length of database: 1,345,240
Effective search space: 40357200
Effective search space used: 40357200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 123 (52.0 bits)