BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0118.p (195 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate A... 112 2e-26 gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate A... 107 7e-25 gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate A... 103 8e-24 gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporte... 102 2e-23 gi|300313548|ref|YP_003777640.1| nitrate/sulfonate/bicarbonate A... 86 2e-18 >gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 256 Score = 112 bits (281), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 66/186 (35%), Positives = 104/186 (55%) Query: 6 SIARVVIGYSVGAAVGVVIGVLTGGSAILSGLLTPIFQLLRPIPPIAFVPIVIVWFGLTE 65 S R++ G+ G +GV +G+ G + LL P + R IPPIAFV + ++W G E Sbjct: 67 SSGRILAGWGAGVVIGVPLGIFMGRFETVRQLLDPYIEFFRFIPPIAFVTLAVIWLGPGE 126 Query: 66 LGKWFLVFWGVFFTVWLATHMGVQRVTETLVRAAQSLGATRWQLLWTVQLPDALPVIFVG 125 L K L+F+ F V L T GVQ V +RAA SLGA +W++L TV LP +P + G Sbjct: 127 LSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGQWKILSTVILPSTVPFMVTG 186 Query: 126 LRTSLSIAFYTLVAAELAGAYAGIAYRLEVTQQNMQIGHMMAGLLVLGFISTVSDRLFQS 185 R ++ +F T+V+AE+ A G+ + + + + G++ LG + + DR+ + Sbjct: 187 ARIAMGNSFLTVVSAEIVSAREGLGALIWTARNFSRTEWVFVGIIALGILGYLFDRVLRV 246 Query: 186 ASRRLL 191 A+R+LL Sbjct: 247 ATRKLL 252 >gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 278 Score = 107 bits (267), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 66/188 (35%), Positives = 109/188 (57%) Query: 6 SIARVVIGYSVGAAVGVVIGVLTGGSAILSGLLTPIFQLLRPIPPIAFVPIVIVWFGLTE 65 S+ARV G+ +G+A+ V +G+L G S LL P FQ LR IP +A++P++++W G+ E Sbjct: 79 SLARVAAGFVIGSALAVALGLLVGISRRAEALLEPSFQALRAIPSLAWIPLLLLWLGIDE 138 Query: 66 LGKWFLVFWGVFFTVWLATHMGVQRVTETLVRAAQSLGATRWQLLWTVQLPDALPVIFVG 125 K L+ G FF V+L G++ + L+ + G L+ + LP +LP +F G Sbjct: 139 TPKVVLIAIGAFFPVYLNLVAGIRDIDHKLIEVGTTSGLNTQALIGHILLPASLPYLFAG 198 Query: 126 LRTSLSIAFYTLVAAELAGAYAGIAYRLEVTQQNMQIGHMMAGLLVLGFISTVSDRLFQS 185 LR LS+A+ LVAAEL A G+ Y L +++ + ++A +L+L + +SD L ++ Sbjct: 199 LRGGLSLAWMFLVAAELIAATKGVGYLLSDGRESSRPDLVLAAILILALLGKLSDGLLRA 258 Query: 186 ASRRLLHW 193 ++ L W Sbjct: 259 VEQKSLGW 266 >gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 273 Score = 103 bits (257), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 107/188 (56%) Query: 6 SIARVVIGYSVGAAVGVVIGVLTGGSAILSGLLTPIFQLLRPIPPIAFVPIVIVWFGLTE 65 S+ RVV G+ +GA + + +G+L G S + GL+ Q++RPIPPIA++P+ I+WFGL Sbjct: 80 SLYRVVAGFLIGAGLALPLGLLMGSSQRIYGLMNLTVQVIRPIPPIAYIPLAILWFGLGN 139 Query: 66 LGKWFLVFWGVFFTVWLATHMGVQRVTETLVRAAQSLGATRWQLLWTVQLPDALPVIFVG 125 FL+ G FF V + T GV++V +RAA++LGA++ L V LP A+P I G Sbjct: 140 PPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQSTLFLRVMLPAAVPYILSG 199 Query: 126 LRTSLSIAFYTLVAAELAGAYAGIAYRLEVTQQNMQIGHMMAGLLVLGFISTVSDRLFQS 185 +R + AF ++ AE+ G+ +R+ ++ ++AG++ +G + D Sbjct: 200 VRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGLAIDLGMSR 259 Query: 186 ASRRLLHW 193 + +L W Sbjct: 260 LNNYMLRW 267 >gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 279 Score = 102 bits (254), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 60/157 (38%), Positives = 89/157 (56%) Query: 37 LLTPIFQLLRPIPPIAFVPIVIVWFGLTELGKWFLVFWGVFFTVWLATHMGVQRVTETLV 96 LL Q++R IP +A +P+VI+WFG+ E K FLV GVFF V+L T G++ V + L+ Sbjct: 118 LLDTTLQMVRNIPALALIPLVILWFGIDETAKLFLVSVGVFFPVYLNTFHGIRSVDQGLI 177 Query: 97 RAAQSLGATRWQLLWTVQLPDALPVIFVGLRTSLSIAFYTLVAAELAGAYAGIAYRLEVT 156 A+S G + W L V LP ALP I VGLR +L + + L+ AE A AGI Y Sbjct: 178 EMAKSYGLSGWPLYRDVILPGALPAILVGLRFALGLVWVLLIVAETISAQAGIGYMTMNA 237 Query: 157 QQNMQIGHMMAGLLVLGFISTVSDRLFQSASRRLLHW 193 ++ +Q ++ G+L+ + ++D + R L W Sbjct: 238 REFLQTDVVLVGILLYALLGKLADTAARWLERFWLRW 274 >gi|300313548|ref|YP_003777640.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 259 Score = 86.3 bits (212), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 90/184 (48%) Query: 11 VIGYSVGAAVGVVIGVLTGGSAILSGLLTPIFQLLRPIPPIAFVPIVIVWFGLTELGKWF 70 ++G+++ VGV +G + G S +L P+ +P AFVP+++VWFG+ Sbjct: 72 MVGFAIAVVVGVTLGFVIGSSPMLYAAAYPLMTAFNALPKAAFVPVLVVWFGIGAGPAIL 131 Query: 71 LVFWGVFFTVWLATHMGVQRVTETLVRAAQSLGATRWQLLWTVQLPDALPVIFVGLRTSL 130 F FF + + G+ + L + LGA R +L V LP ++P F L+ ++ Sbjct: 132 TAFLISFFPIMVNIATGLATLEPELEDVLRVLGARRMDILLKVGLPRSMPYFFASLKVAI 191 Query: 131 SIAFYTLVAAELAGAYAGIAYRLEVTQQNMQIGHMMAGLLVLGFISTVSDRLFQSASRRL 190 ++AF +E+ + GI Y L +M++ AGL+V+G ++ LF +R Sbjct: 192 TLAFVGSTVSEMNASNQGIGYLLVSAGSSMKMPLAFAGLVVIGAMAMAMYELFAIIEKRT 251 Query: 191 LHWS 194 W+ Sbjct: 252 TGWA 255 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.328 0.140 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 432,420 Number of extensions: 12837 Number of successful extensions: 133 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 131 Number of HSP's successfully gapped: 16 Length of query: 195 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 115 Effective length of database: 1,241,070 Effective search space: 142723050 Effective search space used: 142723050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 128 (53.9 bits)