BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0116.p (353 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312309|ref|YP_003776401.1| 6-aminohexanoate-cyclic-dimer h... 134 1e-32 gi|300313659|ref|YP_003777751.1| amidase family protein [Herbasp... 75 6e-15 gi|300309358|ref|YP_003773450.1| amidase family protein [Herbasp... 62 5e-11 gi|300309904|ref|YP_003773996.1| aspartate tRNAAsn/Glu-tRNAGln a... 61 1e-10 gi|300313752|ref|YP_003777844.1| Asp-tRNAAsn/Glu-tRNAGln amidotr... 58 1e-09 >gi|300312309|ref|YP_003776401.1| 6-aminohexanoate-cyclic-dimer hydrolase [Herbaspirillum seropedicae SmR1] Length = 482 Score = 134 bits (337), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 103/261 (39%), Positives = 138/261 (52%), Gaps = 8/261 (3%) Query: 15 DAVALAELVRTRQVSAAETVAQAVEAARLLEPQLGAVLETFDNITSAPSADGANPDGALW 74 D + LA+ + ++S E +AQA+E + P L AV E ++ A G PDG Sbjct: 14 DGLDLAQRIGQGELSPGEALAQAIERLEQVNPALNAVAEKLYHLGEQSVAQGL-PDGPFR 72 Query: 75 GVPLFIKDLGSTIGGRLAENGSALNKDKRSARTDPLIANLHRAGLISVGRSTTAELGMTY 134 GVPL KDL + + G NGS L KD L+ L +AG G +T+ E G +Y Sbjct: 73 GVPLLTKDLFTPLAGARMSNGSLLLKDNVMPVDAELVTRLKKAGFTIFGTTTSPEFGTSY 132 Query: 135 DTTTTYRGLKVTRNPWNPDYTPGGSSGGSAALVAAGVTPLAHSTDGAGSTRIPASLTGLI 194 TT R TRNPW+ D++ GGSSG +AALVAA V P+AH DG GS R+PAS G+ Sbjct: 133 --TTESRLFGATRNPWSLDHSCGGSSGAAAALVAARVLPIAHGNDGGGSLRVPASACGVF 190 Query: 195 GLKVSRGRLPL-PWSFNEYGNATIGEGTFSRTVRDTAAFLDA-AASDYPAGNSFVSGKSP 252 GLK SRG +P+ P + + + S +VRD+AA LD A +D G + + Sbjct: 191 GLKPSRGLMPMGPLAGEGWAGMSTSH-VMSLSVRDSAAVLDQLAGADL--GAPYAAPHYR 247 Query: 253 THTFASALQRAPGKLRIALST 273 A+A AP LRI L T Sbjct: 248 QSFLAAATGAAPQGLRIGLVT 268 >gi|300313659|ref|YP_003777751.1| amidase family protein [Herbaspirillum seropedicae SmR1] Length = 506 Score = 75.5 bits (184), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 71/196 (36%), Positives = 100/196 (51%), Gaps = 11/196 (5%) Query: 16 AVALAELVRTRQVSAAETVAQAVEAARLLEPQLGAVLET-FDNITSAPSA------DGAN 68 AV L +L+ ++Q+S E + + + P + AV T F+ A DG Sbjct: 10 AVELRQLIGSKQLSPVELLEACIARIEDINPHINAVTATCFERARGEARAAEQAVIDG-K 68 Query: 69 PDGALWGVPLFIKDLGSTIGGRLAENGSALNKDKRSARTDPLIANLHRAGLISVGRSTTA 128 P G L G+P+ IKDL T G L GS L + AR + L+A L AG I G++ Sbjct: 69 PLGLLHGLPIGIKDLEET-EGLLTTYGSPLYRGNIPARDNALVARLRAAGAIVAGKTNVP 127 Query: 129 ELGMTYDTTTTYRGLKVTRNPWNPDYTPGGSSGGSAALVAAGVTPLAHSTDGAGSTRIPA 188 E+G ++ G T NP+NP GGSSGGSAA +A + PL +D GS RIPA Sbjct: 128 EMGAGANSRNAVWG--ATGNPFNPLLNAGGSSGGSAAALATDLLPLCSGSDTGGSLRIPA 185 Query: 189 SLTGLIGLKVSRGRLP 204 + G++G + S G +P Sbjct: 186 AKCGVVGFRPSPGLVP 201 >gi|300309358|ref|YP_003773450.1| amidase family protein [Herbaspirillum seropedicae SmR1] Length = 482 Score = 62.4 bits (150), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 105/225 (46%), Gaps = 12/225 (5%) Query: 14 LDAVALAELVRTRQVSAAETVAQAVEAARLLEPQLGAVL------ETFDNITSAPS--AD 65 LDA+AL+ +R+++VS E + +E + P + A++ E D A A Sbjct: 7 LDALALSAAIRSKEVSCREVMQAYLEHIEKMNPHVNAIVSLRPPEELLDEAKRADQLLAQ 66 Query: 66 GANPDGALWGVPLFIKDLGSTIGGRLAENGSALNKDKRSARTDPLIANLHRAGLISVGRS 125 G G + G+P KDL S G GS L+ +A + AG I +G++ Sbjct: 67 GRYL-GWMHGMPQAPKDLASC-KGLPTSKGSPLSSMAPDQSDATCVARVRDAGAIFIGKT 124 Query: 126 TTAELGMTYDTTTTYRGLKVTRNPWNPDYTPGGSSGGSAALVAAGVTPLAHSTDGAGSTR 185 +E G+ ++ G VTRN ++ GGSSGG+ A +A + P+A +D GS R Sbjct: 125 NVSEFGLGSNSYNPLFG--VTRNAYDFSRIAGGSSGGAGAALAMRMLPVADGSDMMGSLR 182 Query: 186 IPASLTGLIGLKVSRGRLPLPWSFNEYGNATIGEGTFSRTVRDTA 230 PA+ + G + ++GR+P + EG RTV D A Sbjct: 183 NPAAFNNVYGFRPTQGRVPYGSGGELFLQQLSTEGPMGRTVADVA 227 >gi|300309904|ref|YP_003773996.1| aspartate tRNAAsn/Glu-tRNAGln amidotransferase subunit A-like protein [Herbaspirillum seropedicae SmR1] Length = 651 Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 108/238 (45%), Gaps = 22/238 (9%) Query: 16 AVALAELVRTRQVSAAETVAQAVEAARLLEPQLGAVLETFDNITSAPSADGANPDGALWG 75 ++ LA L R R A + ++ A L P+ LE D + G P G L G Sbjct: 70 SLVLAYLARIR---AYDQQGPSLNAIVTLNPK---ALEEADQLDRERRQSG--PRGPLHG 121 Query: 76 VPLFIKDLGSTIGGRLAENGSALNKDKRSARTDPL-IANLHRAGLISVGRSTTAELGMTY 134 +P+ +KD T+ + G L A+ D + L AG + +G++T EL Sbjct: 122 IPILVKDNYDTVD--MPTTGGTLALATLQAQADAFQVKRLREAGAVILGKTTMHELAAGV 179 Query: 135 DTTTTYRGLKVTRNPWNPDYTPGGSSGGSAALVAAGVTPLAHSTDGAGSTRIPASLTGLI 194 T ++ G TRNP++P PGGSSGG+ A VAA +D GS RIPA+ L Sbjct: 180 TTVSSLTGF--TRNPYDPRRAPGGSSGGTGAAVAASFAAAGMGSDTCGSIRIPAAHQNLF 237 Query: 195 GLKVSRGRLP----LPWSFNEYGNATIGEGTFSRTVRDTAAFLDAAASDYPAGNSFVS 248 GL+ +RG +P S + A + +R+V D A LDA P +S V Sbjct: 238 GLRTTRGLASRSGVMPLSSTQDVAAPL-----ARSVEDLAIMLDATVGSDPQDSSTVD 290 >gi|300313752|ref|YP_003777844.1| Asp-tRNAAsn/Glu-tRNAGln amidotransferase subunit A [Herbaspirillum seropedicae SmR1] Length = 471 Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 67/131 (51%), Gaps = 4/131 (3%) Query: 73 LWGVPLFIKDLGSTIGGRLAENGSALNKDKRSARTDPLIANLHRAGLISVGRSTTAELGM 132 L+GVP IKD G A + R + T L+A L G I VG+ + Sbjct: 70 LYGVPFSIKDNIDLAGVPTTAACPAFSYVPRESAT--LVAQLIALGAIPVGKCNLDQFAT 127 Query: 133 TYDTTTTYRGLKVTRNPWNPDYTPGGSSGGSAALVAAGVTPLAHSTDGAGSTRIPASLTG 192 + T + G RN +PDY GGSS GS+ VA G++ A TD AGS R+PA+L Sbjct: 128 GLNGTRSPYG--ACRNSVHPDYPSGGSSSGSSLAVALGLSSFALGTDTAGSGRVPAALNN 185 Query: 193 LIGLKVSRGRL 203 L+GLK ++G L Sbjct: 186 LVGLKATKGLL 196 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.128 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,021,419 Number of extensions: 38361 Number of successful extensions: 148 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 141 Number of HSP's successfully gapped: 11 Length of query: 353 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 267 Effective length of database: 1,212,660 Effective search space: 323780220 Effective search space used: 323780220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)