BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0113.p
         (251 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312279|ref|YP_003776371.1| GntR family transcription regul...   115   3e-27
gi|300313880|ref|YP_003777972.1| transcription regulator protein...    91   7e-20

>gi|300312279|ref|YP_003776371.1| GntR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 334

 Score =  115 bits (289), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 128/229 (55%), Gaps = 11/229 (4%)

Query: 6   IVEPSPV--PLYVQVKDMLRERIFDGTYGPHAQLPPESEMGAIFGVSRITVRQALSDLQR 63
           +  P+P   PLY Q+K ++ +R+  G + P   +P E E+G+ F VS+ TVR+A+ +L  
Sbjct: 93  VASPAPTFSPLYQQIKALIMQRLEAGEWKPGELIPSEVELGSRFKVSQGTVRKAIDELAA 152

Query: 64  EGVIFKIPGKGTFVAKKKAAQ---ELTRLEGFAEAMTRKGYEIHNRVVGHRTLPATAEVA 120
           E ++ +  GKGTFVA     Q      RL   ++   R      N+++  + + A+AEVA
Sbjct: 153 ENLVVRRQGKGTFVATHHETQAQFRFLRLMADSDEPQRP----ENKIIEVKRVRASAEVA 208

Query: 121 QQLGVEVGTTVAEIRRVRHLNREPVSLEITYLPEELGQRLRNEDLSGR--DIFLIFENDF 178
           +QL ++ G +V  IRRV+  N  P+ LE  +LP  + + L  E L      ++ +FE++F
Sbjct: 209 RQLDMKSGDSVIFIRRVKSFNGVPIILEDIWLPGAIFKGLTAERLVEYRGPLYGLFESEF 268

Query: 179 GIALGHADLQIGAVIADHALAEALQVSEGTALLRIERLTYTADGKPLDF 227
           G  +  A+ +I AV AD   AE L V+  T LL +ER ++T   KP++ 
Sbjct: 269 GTRMIRAEERIRAVGADPDAAEFLGVTPQTPLLSVERASFTYGDKPVEM 317


>gi|300313880|ref|YP_003777972.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score = 91.3 bits (225), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 121/234 (51%), Gaps = 3/234 (1%)

Query: 12  VPLYVQVKDMLRERIFDGTYGPHAQLPPESEMGAIFGVSRITVRQALSDLQREGVIFKIP 71
           +PLY+Q++D+L  +I    + P   +P E+E+   + V+  TVR+A+  L  EG++ +  
Sbjct: 11  LPLYLQLRDLLATQIRAQKWQPGQPIPSEAELSQTYQVAVGTVRRAIETLMAEGLVERTH 70

Query: 72  GKGTFVAKKKAAQELTRLEGFAEAMTRKGYEIHNRVVGHRTLPATAEVAQQLGVEVGTTV 131
           G+GTFV K +    L R   F  A  R      + +V  + + A A+ A+ L ++    V
Sbjct: 71  GRGTFVRKARFDNSLFRFFRFESADGRP-LAPKSVIVSRKLVEAPAQAAEALQLKPHAKV 129

Query: 132 AEIRRVRHLNREPVSLEITYLPEELGQRLRNE--DLSGRDIFLIFENDFGIALGHADLQI 189
            E+ R+R ++ +PV  E  YL  +  + L ++  +  G  ++ ++E + G+ +  A   +
Sbjct: 130 IELHRLRMVDGQPVLAENIYLCAQRFKALADKAPEEFGDLLYPLYERECGLIVASARETL 189

Query: 190 GAVIADHALAEALQVSEGTALLRIERLTYTADGKPLDFEYLYFRGETFQYHLRI 243
                  A A+ L ++E T ++ IER+ + +DG+PL++         F+Y   I
Sbjct: 190 TVETVTAAQAKLLGLTEKTPVVMIERIAFGSDGQPLEWRQSRGAASKFRYSAEI 243


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 789,628
Number of extensions: 32942
Number of successful extensions: 154
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 2
Length of query: 251
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,226,865
Effective search space: 206113320
Effective search space used: 206113320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)