BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0112.p
         (666 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312277|ref|YP_003776369.1| succinate dehydrogenase flavopr...    89   1e-18

>gi|300312277|ref|YP_003776369.1| succinate dehydrogenase
           flavoprotein subunit [Herbaspirillum seropedicae SmR1]
          Length = 592

 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 114/460 (24%), Positives = 185/460 (40%), Gaps = 82/460 (17%)

Query: 9   DVLVIGGGTAGPMAAAKAKEANPALRVLLLEKANVKRSGAISMGMDGLNNAIVPGFATPE 68
           D +++G G +G  A+ +  EA   L V +L K    RS  ++    G   A +   +   
Sbjct: 14  DAVIVGAGGSGMRASLQLAEA--GLNVAVLSKVFPTRSHTVAA--QGGIGASLGNMSEDN 69

Query: 69  QYVKEITTA--NDGIVNQKTVMAYAQGSFPMIEELDRWGVKFEKDETGDYAMRKVHHMGT 126
            Y     T   +D + +Q  +    + +   + EL+ +G+ F+++  G    R     G 
Sbjct: 70  WYWHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNPDGTIYQRP---FGG 126

Query: 127 YVLPMPE-------------GHDIKKVLYRRLKRARVEITNRLVATRLLTAEDGSIAGAM 173
           +   + E             GH +   LY+R  RA+       +A  L+  E+G + G +
Sbjct: 127 HTANLGEKPVQRACAAADRTGHALLHTLYQRNVRAKTHFFVEWMALDLIRNEEGDVLGVV 186

Query: 174 AFDCRTGDFHVVRAKTVVLSTGAAGRLGLPASGYLFGTYENPTNAGDGYSMAYHAGAELS 233
           A +  TG+  ++ AKT + +TG AGR+   ++           N GDG  MA  AG  L 
Sbjct: 187 ALEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFI-------NTGDGMGMAARAGLPLQ 239

Query: 234 GIECFQINPLIKDYNGPACAYVTGPFGGFTTNSHGERFIE-----------CDYWSGQMM 282
            +E +Q +P      G          GG   NS+GERF+E            D+ S  M 
Sbjct: 240 DMEFWQFHPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPTLKDLAPRDFVSRSMD 299

Query: 283 QEFYNELQGGNGP----VFLKLNHLAEETIRT-IETILHTNERPSRGRFHEGRGTDYREQ 337
           QE       G GP    V L L H+  +TI+  + +IL           H+    D  ++
Sbjct: 300 QEIKE--GRGVGPHKDHVLLDLRHIGADTIKKRLPSILEIA--------HKFANVDATKE 349

Query: 338 MVEMHISEIGLCSGHSASGVWVNEHAETTVP----------GLYAAGDLACVP------- 380
            + + +  I    G    G+  N H +   P          G+YA G+ ACV        
Sbjct: 350 PIPV-VPTIHYQMG----GIPTNIHGQVVAPKGGSMKEVVQGMYAIGECACVSVHGANRL 404

Query: 381 -HNYMLGAFVYGKLAGESAARYCAGQPLAEVSQQQVDANA 419
             N +L   V+G+ AG     +  G  L + S + + A A
Sbjct: 405 GTNSLLDLVVFGRAAGN----HIVGSRLQDQSHKPIPAGA 440


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,908,436
Number of extensions: 76148
Number of successful extensions: 226
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 2
Length of query: 666
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 575
Effective length of database: 1,188,985
Effective search space: 683666375
Effective search space used: 683666375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 134 (56.2 bits)