BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0111.p (472 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313870|ref|YP_003777962.1| nitrate/sulfonate/bicarbonate A... 64 3e-11 gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporte... 60 3e-10 gi|300312620|ref|YP_003776712.1| ABC transporter periplasmic pro... 60 5e-10 >gi|300313870|ref|YP_003777962.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 323 Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 134/290 (46%), Gaps = 28/290 (9%) Query: 2 QLRHNIYMSLFGISFALAAASMTGAVQAETIRIA-IGTQD-TTINCATGGLLIRELKLLE 59 Q RH + L G++ A A AS T V+A ++ IG Q T+N G LE Sbjct: 5 QPRHKRRLLLQGLA-AGALASGTPLVRAAADKVLRIGYQKFNTLNILKGS------GKLE 57 Query: 60 KYLPHDGRYKDAQYDIQWKNFTSGAPLTNEMVAGKLDLGSMADFPGSFNGAAFQKAGKRS 119 + L G + ++W F +G LT + A +DLG AD P F A +G + Sbjct: 58 QALQPQG------WSVKWFEFAAGPQLTEALNANAIDLGHAADTPSVFANA----SGVNA 107 Query: 120 LFITVLSGSTTGSGNGIVVPKASTVQSLAELKGKTISVPFASTAHGMLLRAVKDQGWDPE 179 +++ + G GI V + S ++S+A+LKGK ++ +LL+A+++ G Sbjct: 108 VYLG--AEQPYPKGIGIFVAQESPIRSVADLKGKKVATGRGWNVQFLLLKALEEVGLS-Y 164 Query: 180 KDVN--IITQAPEVAGSALQSNKIDAHADFVPFAELFPHRGYARKIFDGSQ-ANTPTLHG 236 +D+ +T A +V +A QS +DA + PF R + DG+ +N T H Sbjct: 165 RDIEPVYVTNAADVR-AAFQSGNVDAATLWDPFLAGQELATRPRILRDGTGLSNNRTFH- 222 Query: 237 SLVDSDYAKKYPEIVIAYLRAAIEADRLFTAEPEKYSELIEKVTGIEAEV 286 L + ++ +IV + ++ + P++ +EL+ G++ +V Sbjct: 223 -LAVPSFVDRHKDIVRTVFAELKKTNQWTQSHPQETAELLAPQLGVDPKV 271 >gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 327 Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 99/227 (43%), Gaps = 19/227 (8%) Query: 2 QLRHNIYMSLFGISF-ALAAASMTGAVQA-ETIRIAIGTQDTTINCATGGLLIRELKLLE 59 Q R L I+ AL A VQA ET + IG Q A +L++ LE Sbjct: 11 QARRRAIQRLSAIALGALTIALGASPVQAQETKLLRIGYQ----KAANTLVLLKAHGTLE 66 Query: 60 KYLPHDGRYKDAQYDIQWKNFTSGAPLTNEMVAGKLDLGSMADFPGSFNGAAFQKAGKRS 119 K L G +++W F +G L + G +D G + + P F Q AG + Sbjct: 67 KRLQPLG------VEVKWAEFAAGPQLLEALNVGSVDFGYVGEAPPVFA----QAAG--A 114 Query: 120 LFITVLSGSTTGSGNGIVVPKASTVQSLAELKGKTISVPFASTAHGMLLRAVKDQGWDPE 179 F+ T G++V K S ++S+AELKGK I+ S H +++ +K G Sbjct: 115 DFVYTAYEIPTPDAEGLLVQKNSPIKSVAELKGKKIAFNKGSDVHWLVVALLKKAGLQ-Y 173 Query: 180 KDVNIITQAPEVAGSALQSNKIDAHADFVPFAELFPHRGYARKIFDG 226 D+ + AP A +A + +DA A + PF + AR++ G Sbjct: 174 SDIQPVYLAPADARAAFERGAVDAWAIWDPFQAAAEKQVGARRLATG 220 >gi|300312620|ref|YP_003776712.1| ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 333 Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/231 (25%), Positives = 103/231 (44%), Gaps = 11/231 (4%) Query: 66 GRYKDAQYDIQWKNFTSGAPLTNEMVAGKLDLGSMADFPGSFNGAAFQKAGKRSLFITVL 125 G YK D++ F SG L +V G+LD G G N A+ G + V+ Sbjct: 48 GLYKKYGLDVELIEFKSGTDLVKAIVGGQLDSGVF----GFSNAVAWASKGAD---LKVV 100 Query: 126 SGSTTGSGNGIVVPKASTVQSLAELKGKTISVPFASTAHGMLLRAV--KDQGWDPEKDVN 183 G+ G + +V + S + +A+LKGKT++ + +L+ V +D G + DVN Sbjct: 101 GGAQLGY-HALVAREDSGINKVADLKGKTLASQAEGSTADTVLKGVVLRDAGIKAD-DVN 158 Query: 184 IITQAPEVAGSALQSNKIDAHADFVPFAELFPHRGYARKIFDGSQANTPTLHGSLVDSDY 243 ++ +P+VA +L ++DA F P A + +++++ + + + Sbjct: 159 VMGVSPQVAVQSLVGKRVDAAFLFEPQARIAQLIAPVKQVYEIGEVWPFPCMVVITSGET 218 Query: 244 AKKYPEIVIAYLRAAIEADRLFTAEPEKYSELIEKVTGIEAEVNYLFHGPL 294 KK E V L A +A L +P + S+LI E + L HG + Sbjct: 219 LKKKREAVWKSLDAQRDAITLLQKKPAEASKLIAGYFIAEPTLKTLKHGEM 269 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.131 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,452,194 Number of extensions: 61072 Number of successful extensions: 207 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 206 Number of HSP's successfully gapped: 6 Length of query: 472 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 383 Effective length of database: 1,198,455 Effective search space: 459008265 Effective search space used: 459008265 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)