BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0110.p (294 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate A... 126 2e-30 gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporte... 123 2e-29 gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate A... 119 3e-28 gi|300310541|ref|YP_003774633.1| nitrate transporter permease [H... 117 1e-27 gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate A... 107 2e-24 >gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 278 Score = 126 bits (317), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 71/181 (39%), Positives = 104/181 (57%) Query: 67 NLGLITFQNVPSPKEVLQAAWALAQSPRLLSHLSASLYRVFAGFVVAALAGIVLGMLIGR 126 L LI + +P P E+ W+LAQ LL H++ASL RV AGFV+ + + LG+L+G Sbjct: 44 RLELIPARLLPPPSELAHTLWSLAQRGELLPHIAASLARVAAGFVIGSALAVALGLLVGI 103 Query: 127 LRWLADVLLPPLELLRPIPAVAWIPLAILMFPSSEISMIYITFIGALFPILLNTIHGVEG 186 R +L P + LR IP++AWIPL +L E + + IGA FP+ LN + G+ Sbjct: 104 SRRAEALLEPSFQALRAIPSLAWIPLLLLWLGIDETPKVVLIAIGAFFPVYLNLVAGIRD 163 Query: 187 VDARLIASARSLGSGRRAIFTEVILPAAAPSIVTGLSIGMGTAWFCLVTAEMIAGQFGIG 246 +D +LI + G +A+ ++LPA+ P + GL G+ AW LV AE+IA G+G Sbjct: 164 IDHKLIEVGTTSGLNTQALIGHILLPASLPYLFAGLRGGLSLAWMFLVAAELIAATKGVG 223 Query: 247 Y 247 Y Sbjct: 224 Y 224 >gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 279 Score = 123 bits (308), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 124/222 (55%) Query: 69 GLITFQNVPSPKEVLQAAWALAQSPRLLSHLSASLYRVFAGFVVAALAGIVLGMLIGRLR 128 G ++ + +P P VL+AAW L+ S L HL+ S R +GF V A G++LG+L G LR Sbjct: 54 GWLSSRILPEPLAVLKAAWELSASGELWRHLAVSSGRAASGFAVGAGLGLILGLLSGSLR 113 Query: 129 WLADVLLPPLELLRPIPAVAWIPLAILMFPSSEISMIYITFIGALFPILLNTIHGVEGVD 188 +L L+++R IPA+A IPL IL F E + +++ +G FP+ LNT HG+ VD Sbjct: 114 SAELLLDTTLQMVRNIPALALIPLVILWFGIDETAKLFLVSVGVFFPVYLNTFHGIRSVD 173 Query: 189 ARLIASARSLGSGRRAIFTEVILPAAAPSIVTGLSIGMGTAWFCLVTAEMIAGQFGIGYY 248 LI A+S G ++ +VILP A P+I+ GL +G W L+ AE I+ Q GIGY Sbjct: 174 QGLIEMAKSYGLSGWPLYRDVILPGALPAILVGLRFALGLVWVLLIVAETISAQAGIGYM 233 Query: 249 TWASYTIQNYADIIVGMLFIGVMGMGSSALIKKLGGLLMPWY 290 T + ++VG+L ++G + + L + W+ Sbjct: 234 TMNAREFLQTDVVLVGILLYALLGKLADTAARWLERFWLRWH 275 >gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 273 Score = 119 bits (298), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 88/257 (34%), Positives = 142/257 (55%), Gaps = 25/257 (9%) Query: 53 VCLLLWQWASTVHLNLGLITFQNVPSPKEVLQA-------------------AWALAQSP 93 + + LW+ AS G I Q +PSP VL+ AWA S Sbjct: 18 IVIALWEGASRA----GWINPQILPSPWAVLRKWVEYATPLKPYDPEAGSWLAWAF--SG 71 Query: 94 RLLSHLSASLYRVFAGFVVAALAGIVLGMLIGRLRWLADVLLPPLELLRPIPAVAWIPLA 153 L+ SLYRV AGF++ A + LG+L+G + + ++ ++++RPIP +A+IPLA Sbjct: 72 ELVMDAIGSLYRVVAGFLIGAGLALPLGLLMGSSQRIYGLMNLTVQVIRPIPPIAYIPLA 131 Query: 154 ILMFPSSEISMIYITFIGALFPILLNTIHGVEGVDARLIASARSLGSGRRAIFTEVILPA 213 IL F +++ +GA FP+L+NTI GV VD+ + +AR+LG+ + +F V+LPA Sbjct: 132 ILWFGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQSTLFLRVMLPA 191 Query: 214 AAPSIVTGLSIGMGTAWFCLVTAEMIAGQFGIGYYTWASYTIQNYADIIVGMLFIGVMGM 273 A P I++G+ IG+GTA+ ++ AEMIA G+G+ + II GM+ IG++G+ Sbjct: 192 AVPYILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGL 251 Query: 274 GSSALIKKLGGLLMPWY 290 + +L ++ W+ Sbjct: 252 AIDLGMSRLNNYMLRWH 268 >gi|300310541|ref|YP_003774633.1| nitrate transporter permease [Herbaspirillum seropedicae SmR1] Length = 307 Score = 117 bits (293), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 61/157 (38%), Positives = 98/157 (62%) Query: 101 ASLYRVFAGFVVAALAGIVLGMLIGRLRWLADVLLPPLELLRPIPAVAWIPLAILMFPSS 160 ASL RV GF +AAL GI LG IGR+ +LA + P + LLRP+ +AW+P+ +L+F S+ Sbjct: 115 ASLQRVGTGFGLAALVGIPLGFAIGRVEFLARMFGPIISLLRPVSPLAWLPIGLLVFKSA 174 Query: 161 EISMIYITFIGALFPILLNTIHGVEGVDARLIASARSLGSGRRAIFTEVILPAAAPSIVT 220 + I+ FI +++P+++NT GV+ V + AR L + T+++ P+ P ++T Sbjct: 175 NPAAIWSIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKVLTKILFPSVLPYMLT 234 Query: 221 GLSIGMGTAWFCLVTAEMIAGQFGIGYYTWASYTIQN 257 G+ + +GTAW +V AEM+ G GIG++ W + N Sbjct: 235 GVRLSIGTAWLVIVAAEMLTGGVGIGFWVWDEWNNLN 271 >gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 256 Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 116/218 (53%), Gaps = 6/218 (2%) Query: 55 LLLWQWASTVHLNLGLITFQNVPSPKEVLQAAWALAQSPRLLSHLSASLYRVFAGFVVAA 114 L+LWQ S L L PS AA L L + AS R+ AG+ Sbjct: 26 LVLWQLVSLTTSPLFL------PSVSMTWAAALELISDGTLQQSVLASSGRILAGWGAGV 79 Query: 115 LAGIVLGMLIGRLRWLADVLLPPLELLRPIPAVAWIPLAILMFPSSEISMIYITFIGALF 174 + G+ LG+ +GR + +L P +E R IP +A++ LA++ E+S I + F +F Sbjct: 80 VIGVPLGIFMGRFETVRQLLDPYIEFFRFIPPIAFVTLAVIWLGPGELSKIALIFYTTVF 139 Query: 175 PILLNTIHGVEGVDARLIASARSLGSGRRAIFTEVILPAAAPSIVTGLSIGMGTAWFCLV 234 + LNTI GV+ V+ + +A SLG+G+ I + VILP+ P +VTG I MG ++ +V Sbjct: 140 IVTLNTIAGVQAVNPLRLRAAASLGAGQWKILSTVILPSTVPFMVTGARIAMGNSFLTVV 199 Query: 235 TAEMIAGQFGIGYYTWASYTIQNYADIIVGMLFIGVMG 272 +AE+++ + G+G W + + VG++ +G++G Sbjct: 200 SAEIVSAREGLGALIWTARNFSRTEWVFVGIIALGILG 237 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.139 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 873,399 Number of extensions: 34512 Number of successful extensions: 246 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 243 Number of HSP's successfully gapped: 16 Length of query: 294 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 210 Effective length of database: 1,222,130 Effective search space: 256647300 Effective search space used: 256647300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)