BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0109.p (218 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 197 4e-52 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 171 3e-44 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 161 5e-41 gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate A... 152 2e-38 gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A... 152 2e-38 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 197 bits (502), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 95/192 (49%), Positives = 129/192 (67%), Gaps = 3/192 (1%) Query: 1 VDGAAVDGPHPDRGLVFQHHTLFPWKRVLDNVAFGLKMKGVARGERHQRARDLLKLVGLE 60 +DG V GP +RG+VFQ +L PWK V DNVA GLK GV++ + +RA++LL+LVGL+ Sbjct: 65 LDGQPVSGPGAERGVVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRLVGLQ 124 Query: 61 DFEHSYPAHLSGGMQQRVEIARVLINHPRVMLMDEPFGALDAQTRLKMQELLLEVWGRIE 120 DF + P LSGGM+QRV +AR L +P+++LMDEPFGALD+ TR +MQELL+ VW R Sbjct: 125 DFARAAPYELSGGMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWARTG 184 Query: 121 TTILFITHDIDEALFLADRILVMSPRPGRIIEEIKLDFARPXRIIEEIKLDFSLSLSREF 180 + FITH I+EALFL ++VMSPRPGRI+ + DF R E + ++ F Sbjct: 185 KQVFFITHSIEEALFLGTEVIVMSPRPGRIVARFETDFVRRFAAGCEAR---AIKTEPAF 241 Query: 181 TELKRHCLALLH 192 EL+ A++H Sbjct: 242 AELREEIRAIVH 253 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 171 bits (434), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 84/160 (52%), Positives = 108/160 (67%) Query: 1 VDGAAVDGPHPDRGLVFQHHTLFPWKRVLDNVAFGLKMKGVARGERHQRARDLLKLVGLE 60 D V P PDRG+VFQ + LFPW V NVAFGL++KG + E HQR LL +GL Sbjct: 72 TDDKVVSEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLLDKLGLI 131 Query: 61 DFEHSYPAHLSGGMQQRVEIARVLINHPRVMLMDEPFGALDAQTRLKMQELLLEVWGRIE 120 DF +P LSGGM+QRV IARVL +MLMDEPFGALDA TR +Q+ LL +W Sbjct: 132 DFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWDEFR 191 Query: 121 TTILFITHDIDEALFLADRILVMSPRPGRIIEEIKLDFAR 160 TI+F+TH I+EA++LADRI+VM+ RPG + ++ ++ R Sbjct: 192 KTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPR 231 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 161 bits (407), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 82/190 (43%), Positives = 120/190 (63%), Gaps = 12/190 (6%) Query: 2 DGAAVDGPHPDRGLVFQHHTLFPWKRVLDNVAFGLKMKGVARGERHQRARDLLKLVGLED 61 DG + GPHP+R L+FQ + L+PW + NVA L+ + V + + ++AR L+ V L+ Sbjct: 62 DGQTIRGPHPERTLMFQENALYPWLTLQQNVALALEFQSVDKKKAAEQARVWLENVKLKG 121 Query: 62 FEHSYPAHLSGGMQQRVEIARVLINHPRVMLMDEPFGALDAQTRLKMQELLLEVWGRIET 121 FEH YP +SGGM+QR +AR I+ P+ +L+DEPFGALDA TR+ +Q+ L ++ + Sbjct: 122 FEHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQGP 181 Query: 122 TILFITHDIDEALFLADRILVMSPRPGRIIEEIKLDFARPXRIIEEIKLDFSLSLSREFT 181 T++ +THD+DEALFLADRI V SPRP ++++E L + E D S EF Sbjct: 182 TVVLVTHDVDEALFLADRIFVFSPRPAKVLKEFNL-------VHHEKTHDLS-----EFA 229 Query: 182 ELKRHCLALL 191 ++R L LL Sbjct: 230 AIRRDILCLL 239 >gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 265 Score = 152 bits (385), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 85/160 (53%), Positives = 107/160 (66%), Gaps = 4/160 (2%) Query: 1 VDGAAVDGPHPDRGLVFQH-HTLFPWKRVLDNVAFGLKMKGVARGERHQRARDLLKLVGL 59 VDG V GP DRG+VFQ LFPW V +NV +GLK++GVA ER A + LVGL Sbjct: 64 VDGKRVKGPGLDRGVVFQSSEALFPWLSVRENVEYGLKLRGVASAERRAAAERYVSLVGL 123 Query: 60 EDFEHSYPAHLSGGMQQRVEIARVLINHPRVMLMDEPFGALDAQTRLKMQELLLEVWGRI 119 + +PA LSGGM+QR +IARVL+N P V+LMDEPFGALDAQTR +Q L +W Sbjct: 124 KHAIDKFPAELSGGMRQRAQIARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIWKST 183 Query: 120 ETTILFITHDIDEALFLADRILVMSPRPG---RIIEEIKL 156 TI+F+THDI EA+ LADR++ M+ P + IEE+ L Sbjct: 184 GCTIVFVTHDIWEAILLADRVVTMTAGPRAHIKTIEEVHL 223 >gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 275 Score = 152 bits (383), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 77/198 (38%), Positives = 119/198 (60%), Gaps = 7/198 (3%) Query: 1 VDGAAVDGPHPDRGLVFQHHTLFPWKRVLDNVAFGLKMKGVARGERHQRARDLLKLVGLE 60 V G V+G P G VFQ+ +FPW+ V +NVA G +G + + H A + ++ VGL+ Sbjct: 85 VMGQPVNGIDPRIGFVFQNDAVFPWRSVRENVAAGPLFRGQPKAQAHALADEWIRRVGLD 144 Query: 61 DFEHSYPAHLSGGMQQRVEIARVLINHPRVMLMDEPFGALDAQTRLKMQELLLEVWGRIE 120 F YP LSGGM++RV +A+ IN P ++LMDEPF ALD QTR MQ+ LL +W Sbjct: 145 KFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDELLRLWSAHS 204 Query: 121 TTILFITHDIDEALFLADRILVMSPRPGRIIEEIKLDFARPXRIIEEIKLDFSLSLSREF 180 +++F+THD++EA+ LAD++ V++ RP + +D RP R++EE++ + + F Sbjct: 205 GSVVFVTHDLEEAIALADKVYVLTARPATLKSVYPIDLPRP-RVMEEVRYE------QRF 257 Query: 181 TELKRHCLALLHPETRVV 198 ++ R A L E + Sbjct: 258 IDISRRIWADLREEVHIA 275 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.143 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 713,793 Number of extensions: 27867 Number of successful extensions: 290 Number of sequences better than 1.0e-08: 89 Number of HSP's gapped: 246 Number of HSP's successfully gapped: 92 Length of query: 218 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 136 Effective length of database: 1,231,600 Effective search space: 167497600 Effective search space used: 167497600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)