BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0104.p
         (234 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312966|ref|YP_003777058.1| major facilitator superfamily p...   124   5e-30
gi|300314020|ref|YP_003778112.1| major facilitator superfamily p...    58   7e-10

>gi|300312966|ref|YP_003777058.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 544

 Score =  124 bits (312), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/170 (54%), Positives = 115/170 (67%)

Query: 5   FVPVELMQKRPMIDLRLFRHAPFVGAVLAMFGYASSAQVMMTFLPLYLQNAFSYSAIVAG 64
           F+  +     PM++L LFRHA FV AV AMF YA+SAQVM + LPL+LQNA   SA   G
Sbjct: 269 FIAWQRRAAHPMLELSLFRHAGFVAAVAAMFAYAASAQVMASLLPLFLQNARGLSAWQTG 328

Query: 65  LAMLPFALAMIIFPRVGAALTRYMPLHGVMGLGMALVCAGNVLVAIAAYAGTYWMVLAGM 124
           LAMLPFALAM++ P+VG+ L R++    ++ LG+ +   GN+L+  AA +G       GM
Sbjct: 329 LAMLPFALAMLLLPQVGSRLARWLSSPQMLALGLGVTALGNLLMIQAALSGAAAWTALGM 388

Query: 125 LVTGSGAGLLNGNTQKAIMNCVPRERTGMASGISTTTRFSAIVLAIACLG 174
            V GSG GLLNG TQKAIM  VPRER GMASGISTT RF+ ++   A LG
Sbjct: 389 AVLGSGGGLLNGQTQKAIMGNVPRERAGMASGISTTARFTGVLAGFAGLG 438


>gi|300314020|ref|YP_003778112.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 475

 Score = 57.8 bits (138), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query: 9   ELMQKRPMIDLRLFRHAPF-VGAVLAMFGYASSAQVMMTFLPLYLQNAFSYSAIVAGLAM 67
           EL    PM+ + LFRH  F + AV A+  +A+     ++ LP +  +    S +  GL M
Sbjct: 265 ELSHPAPMLPVDLFRHPMFSLSAVTAVCSFAAQGLAFVS-LPFFFHHDLGRSQVEIGLLM 323

Query: 68  LPFALAMIIFPRVGAALTRYMPLHGVMGLGMALVCAGNVLVAIAAYAGTYWMVLAGMLVT 127
            P+ +A+ I   +   ++   P+  + G+G+AL+CAG + +     + + W +   ML+ 
Sbjct: 324 TPWPVAVAIMAPIAGRMSDRYPVGMLGGVGLALLCAGLLSMTFMPASPSVWEISWRMLLC 383

Query: 128 GSGAGLLNGNTQKAIMNCVPRERTGMASGISTTTRF 163
           G G G       KA+M   P  R+G ASGI  T R 
Sbjct: 384 GMGFGFFQSPNLKALMTSAPPHRSGGASGIVATARL 419


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.138    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 603,611
Number of extensions: 23716
Number of successful extensions: 146
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 4
Length of query: 234
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 152
Effective length of database: 1,231,600
Effective search space: 187203200
Effective search space used: 187203200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 129 (54.3 bits)