BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0101.p (515 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312606|ref|YP_003776698.1| EAL domain transmembrane protei... 161 9e-41 gi|300310189|ref|YP_003774281.1| transmembrane protein [Herbaspi... 154 2e-38 gi|300312026|ref|YP_003776118.1| signal transduction protein con... 150 2e-37 gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodies... 150 2e-37 gi|300311036|ref|YP_003775128.1| signal transduction protein [He... 143 3e-35 >gi|300312606|ref|YP_003776698.1| EAL domain transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 695 Score = 161 bits (408), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 92/221 (41%), Positives = 133/221 (60%), Gaps = 12/221 (5%) Query: 279 IVISIAVVTLTLILIGISYHRKKLYERLARSEREKICLIEQLEKEKTRAYQLASHDYLTG 338 IV+++A +T+ L+ S +L R A+ R E+L Q+ HD LT Sbjct: 224 IVVTLAALTIALL---TSVLDARLESRTAKLARSLAAANEELT-------QMVLHDQLTR 273 Query: 339 IPNRMLFSELAGAELSRAKRSPNLYALFFIDLDGFKPINDTLGHAVGDLLLKAVAQRLCT 398 +PNR L + +++A R +AL F+DLDGFK IND+LGH VGD LL VAQRL + Sbjct: 274 LPNRTLLEDRLNQAINKAAREQGHFALMFMDLDGFKAINDSLGHHVGDRLLVEVAQRLTS 333 Query: 399 NLREYDLVARLGGDEFVVLLSDIKYQSQIADIADKLIKAVGAPYLNLGGHEVGTSLSIGI 458 + R D VARLGGDEFV+L+ D+ +A+KL++AV P+ + HE+ S S+GI Sbjct: 334 SSRANDTVARLGGDEFVILV-DLNTPEDAMGVAEKLVEAVNQPF-KVDQHELRVSASVGI 391 Query: 459 ALYPDDGHTVDELLSKADAAMYAAKKDGKGAYRFHDSSVHS 499 A+YP+DG T +L+ ADAAMY K+ G+ Y F + S+++ Sbjct: 392 AIYPEDGATRHDLVINADAAMYHTKRSGRNGYHFFEPSMNA 432 >gi|300310189|ref|YP_003774281.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 706 Score = 154 bits (388), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 75/178 (42%), Positives = 116/178 (65%), Gaps = 1/178 (0%) Query: 322 KEKTRAYQLASHDYLTGIPNRMLFSELAGAELSRAKRSPNLYALFFIDLDGFKPINDTLG 381 + + A+HD LTG+PNR L ++ + A+R+ +A+ F+DLDGFK IND+LG Sbjct: 253 RTNDKLLHFATHDVLTGLPNRALLADRIQHAVEVARRNGKTFAVLFMDLDGFKAINDSLG 312 Query: 382 HAVGDLLLKAVAQRLCTNLREYDLVARLGGDEFVVLLSDIKYQSQIADIADKLIKAVGAP 441 HAVGD LL AVAQR+ LR D+VAR+GGDEFVV++ ++ + +++ ++ A+ Sbjct: 313 HAVGDGLLVAVAQRIRQCLRGEDMVARIGGDEFVVVVGNLSSPDVVEQLSENILAALRQD 372 Query: 442 YLNLGGHEVGTSLSIGIALYPDDGHTVDELLSKADAAMYAAKKDGKGAYRFHDSSVHS 499 + + + + SIGIA+YP+ G +VD L+ ADAAMY AK+ G+ YRF + ++H+ Sbjct: 373 F-QIDDATLRVTSSIGIAVYPNSGDSVDALMKNADAAMYEAKQSGRNTYRFFEPAMHA 429 >gi|300312026|ref|YP_003776118.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 1106 Score = 150 bits (380), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 75/180 (41%), Positives = 107/180 (59%), Gaps = 1/180 (0%) Query: 326 RAYQLASHDYLTGIPNRMLFSELAGAELSRAKRSPNLYALFFIDLDGFKPINDTLGHAVG 385 R LA +D LTG+PNR L ++ ++ A+ + A+ +DLD FK INDT GH G Sbjct: 665 RIRHLAHYDELTGLPNRFLCTQHVSNAITHAEHRNGMVAVILMDLDRFKNINDTFGHETG 724 Query: 386 DLLLKAVAQRLCTNLREYDLVARLGGDEFVVLLSDIKYQSQIADIADKLIKAVGAPYLNL 445 + +L+ +AQR +LRE D++AR+GGDEF+VL+ D Q+ +IA KL+ P++ + Sbjct: 725 EAVLQEIAQRFRNSLRELDILARVGGDEFIVLVDDFDDPVQLGEIAQKLLTEARKPFI-I 783 Query: 446 GGHEVGTSLSIGIALYPDDGHTVDELLSKADAAMYAAKKDGKGAYRFHDSSVHSGLSGRL 505 G E S+SIGIA YP DG L+ AD AMY AK GK YRF +++ R+ Sbjct: 784 DGQEAMLSVSIGIATYPGDGDNAQTLIKNADIAMYRAKHHGKDDYRFFSDEINTNTVERI 843 >gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domains protein [Herbaspirillum seropedicae SmR1] Length = 701 Score = 150 bits (379), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 81/176 (46%), Positives = 113/176 (64%), Gaps = 2/176 (1%) Query: 331 ASHDYLTGIPNRMLFSELAGAELSRAKRSPNLYALFFIDLDGFKPINDTLGHAVGDLLLK 390 A+HD LTG+PNR + E L A++ L A+ F+DLD FK IND+LGH VGD LLK Sbjct: 266 ATHDALTGLPNRNMLHEHLQRALRVARQKGALTAVAFVDLDQFKFINDSLGHQVGDELLK 325 Query: 391 AVAQRLCTNLREYDLVARLGGDEFVVLLSD-IKYQSQIADIADKLIKAVGAPYLNLGGHE 449 VAQRL LRE D+VAR GGDEFV++L + + ++ IA++ +++ AV P+ G E Sbjct: 326 TVAQRLQACLREADMVARQGGDEFVLVLQNQTEGEAGIAEVMQRILAAVARPW-QAGDRE 384 Query: 450 VGTSLSIGIALYPDDGHTVDELLSKADAAMYAAKKDGKGAYRFHDSSVHSGLSGRL 505 + SIG++ YP DG V+ LL AD+AMY AK+ G+ ++F + S +S RL Sbjct: 385 FQVTASIGVSRYPADGKDVESLLKHADSAMYRAKEQGRNNFQFFAPWMDSQVSNRL 440 >gi|300311036|ref|YP_003775128.1| signal transduction protein [Herbaspirillum seropedicae SmR1] Length = 750 Score = 143 bits (361), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 74/162 (45%), Positives = 105/162 (64%), Gaps = 1/162 (0%) Query: 331 ASHDYLTGIPNRMLFSELAGAELSRAKRSPNLYALFFIDLDGFKPINDTLGHAVGDLLLK 390 A++D L+G+PNR L ++ E++ AK+ A+ FIDLD FK +ND+LGH+VGD LL Sbjct: 313 ANYDPLSGLPNRRLLGDMLQREVASAKKHAYPLAVVFIDLDRFKDVNDSLGHSVGDQLLV 372 Query: 391 AVAQRLCTNLREYDLVARLGGDEFVVLLSDIKYQSQIADIADKLIKAVGAPYLNLGGHEV 450 AQR+ ++RE+DLVARL GDEFV +L ++ + + I D ++ A+ P+ LG H V Sbjct: 373 VAAQRVRASVREHDLVARLAGDEFVAVLPRLEASAALTRIGDDIVAALAEPF-QLGEHRV 431 Query: 451 GTSLSIGIALYPDDGHTVDELLSKADAAMYAAKKDGKGAYRF 492 S S+GIA+YP D TV L+ AD AM+AAK G+ F Sbjct: 432 RISASVGIAIYPHDADTVTTLIGCADQAMFAAKGGGRNGLAF 473 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,377,711 Number of extensions: 52425 Number of successful extensions: 251 Number of sequences better than 1.0e-08: 39 Number of HSP's gapped: 221 Number of HSP's successfully gapped: 39 Length of query: 515 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 426 Effective length of database: 1,198,455 Effective search space: 510541830 Effective search space used: 510541830 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)