BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0098.p (756 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312090|ref|YP_003776182.1| ATP-dependent DNA helicase [Her... 779 0.0 gi|300309775|ref|YP_003773867.1| ATP-dependent DNA helicase [Her... 203 5e-53 gi|300313605|ref|YP_003777697.1| ATP-dependent DNA helicase rep ... 191 1e-49 >gi|300312090|ref|YP_003776182.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1] Length = 707 Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/649 (60%), Positives = 481/649 (74%), Gaps = 8/649 (1%) Query: 7 DYLEKLNPEQRQAVEFGIVPGLPGQQAALPAPARPLLVIAGAGSGKTNTLAHRVAHLIVN 66 D +LN +QR+AVE G LP P+ PLL++AGAGSGKTNTLAHRVA L++ Sbjct: 21 DPFARLNAQQREAVEHG--GKLP------PSQQPPLLIVAGAGSGKTNTLAHRVARLVLE 72 Query: 67 GADPRRILLMTFSRRAAAEMTRRVQRICGEALGANGRIMADALSWAGTFHGIGAQILREY 126 GADP+RILL++FSRRAAA+M RRV ++ + LG L W+GTFH IGA++LREY Sbjct: 73 GADPQRILLLSFSRRAAADMGRRVGQVIAQVLGLAASDTPPQLHWSGTFHAIGARLLREY 132 Query: 127 ADQIGLDPNFSIHDREDSADLMNLVRHELGLSKTEKRFPLKSTCLAIYSRVVNSEAPLDS 186 A IGL+ +F+I DR DS DLM L+RH++GLS TEKRFPLK+TCLAIYSR VN+ L Sbjct: 133 AKVIGLEEDFTIQDRGDSEDLMGLLRHDMGLSATEKRFPLKATCLAIYSRAVNTRQDLGE 192 Query: 187 ILHKVFPWCAEWEAQLRTLFGAYVEAKQAHNVLDYDDLLLYWAQTIGERVLADDIGARFD 246 +L + FPWC EWE L LFG YV+AK+ +VLDYDDLLL+WA +G+ +A +G RFD Sbjct: 193 VLQQHFPWCCEWERPLGELFGRYVDAKEEQHVLDYDDLLLFWADMLGDAQIAQSVGQRFD 252 Query: 247 HVLVDEYQDTNRLQSSILLALKPDGRGLTVVGDDAQAIYSFRAATVRNILDFPRAFDPPA 306 HVLVDEYQDTNRLQ+ IL +KPDG G+T VGDDAQAIYSFR ATVRNILDFP F P Sbjct: 253 HVLVDEYQDTNRLQAEILQRMKPDGAGVTAVGDDAQAIYSFRGATVRNILDFPGLFTQPV 312 Query: 307 DIVTLDRNYRSTQTILAAANSVIDKALERFTKNLWTERVSDHKPQLVSVRDEADQACYIV 366 ++TL++NYRSTQ IL A+N+VI A ER K+LW+++ S KPQLV + DEA+QA ++ Sbjct: 313 RLLTLEQNYRSTQPILHASNAVIADAPERHVKHLWSDKPSSQKPQLVVIPDEAEQARWVA 372 Query: 367 ERVLENREAGSTLKDQAVLFRASDHSGPLEIELVRRNIPFVKFGGLKFLDSAHIKDMLAM 426 R+L +RE G TLK QAVLFR + HS LE+EL RRNIPFVKFGGLKFL+S HIKD+LA+ Sbjct: 373 NRILAHREEGLTLKSQAVLFRTATHSAALELELARRNIPFVKFGGLKFLESGHIKDLLAL 432 Query: 427 LRFVQNPRDRVAGFRLMQLLPGVGPGSAQKVLEAMATHADPIAALSELPAPPRSGDDWRG 486 LR NP R+AG R +QL+PGVGP +A+KVL+ MA ADP AL AP W+ Sbjct: 433 LRLAHNPSGRMAGLRALQLIPGVGPATARKVLDLMAAAADPADALLNFGAPANIALQWQA 492 Query: 487 FVEVLQFMAQGRTGWPGEIAHARSWYAPHLERQHEDAATRQADLLQLEQIASGYPSRERF 546 F + M + WP +I AR WY P L+ +++DA R AD+ QL +A+GY SRE+F Sbjct: 493 FADTYALMRRASASWPTDILAARDWYLPQLQERYDDAQARAADIEQLAVLANGYASREKF 552 Query: 547 LTELTLDPPDATSDQSGVPLLDEDYLILSTIHSSKGQEWKSVYVLNVVDGCIPADLATGS 606 LTELTLDPP+A+SD SG PL DEDYL LSTIHS+KGQEW+SV++LNVVDGCIP+DLATGS Sbjct: 553 LTELTLDPPEASSDFSGPPLRDEDYLTLSTIHSAKGQEWRSVHILNVVDGCIPSDLATGS 612 Query: 607 TAEIEEERRLLYVAMTRAKDDLHLMVPQKFFTGGQHAQGDRHVYASRSR 655 AEI EERRLLYVAMTRA+ LHL+VPQ+F+ Q QGDRHV RSR Sbjct: 613 EAEIAEERRLLYVAMTRARQYLHLVVPQRFYITQQTPQGDRHVNGIRSR 661 >gi|300309775|ref|YP_003773867.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1] Length = 759 Score = 203 bits (516), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 186/667 (27%), Positives = 306/667 (45%), Gaps = 90/667 (13%) Query: 33 AALPAPARPLLVIAGAGSGKTNTLAHRVAHLIVNG-ADPRRILLMTFSRRAAAEMTRRVQ 91 AA+ PA+ L++AGAGSGKT L R+A LI G P IL +TF+ +AA EMT R+ Sbjct: 14 AAVTLPAQSALILAGAGSGKTRVLTTRIAWLIQTGQVSPSGILAVTFTNKAAKEMTARLS 73 Query: 92 RICGEALGANGRIMADALSWAGTFHGIGAQILREYADQIGLDPNFSIHDREDSADLMNLV 151 + L N R M W GTFHG+ ++LR + GL F I D +D + + Sbjct: 74 GM----LPINTRGM-----WIGTFHGLCNRLLRAHHKDAGLPQTFQILDTQDQLSAIKRL 124 Query: 152 RHELGLSKTEKRFPLKSTCLAIYSRVVNSEAPLDSILHKVFPWCAEWEAQLRTLFGAYVE 211 ++ + ++++P ++ I S A + K ++ + L+ Y + Sbjct: 125 LKQMNVD--DEKYPPRNLMYFINS------AKDQGLRAKDVDAYDDYNRKFVELYELYDQ 176 Query: 212 AKQAHNVLDYDDLLLYWAQTIG-ERVLADDIGARFDHVLVDEYQDTNRLQSSILLALKPD 270 Q V+D+ +LLL + + + L + +RF H+LVDE+QDTN LQ L + Sbjct: 177 QCQREGVVDFAELLLRTYELLSRNQPLREHYQSRFRHILVDEFQDTNDLQYKWLKLMAGQ 236 Query: 271 GRGLTVVGDDAQAIYSFRAATVRNILDFPRAFDPPADIVTLDRNYRSTQTILAAANSVID 330 + VGDD Q+IY+FR A V N+ F + F +++ L++NYRS IL AN +I Sbjct: 237 HNAVFAVGDDDQSIYAFRGANVGNMQAFEQEFHVQ-NLIKLEQNYRSHGHILDTANELIA 295 Query: 331 KALERFTKNLWTERVSDHKPQLVSVRDEADQACYIVERVLENREAGSTLKDQAVLFRASD 390 +R KNL T+ + ++ + +A +I+E+V + G + A+L+R++ Sbjct: 296 NNSKRLGKNLRTDAGHGEQVRVYEATSDLQEAQWIIEQVKDLIAEGWARSEIAILYRSNA 355 Query: 391 HSGPLEIELVRRNIPFVKFGGLKFLDSAHIKDMLAMLRFVQNPRDRVAGFRLMQL-LPGV 449 S LE L IP+ +GG +F + A IK +A L+ + N + A R++ G+ Sbjct: 356 QSRVLEHALFSSAIPYRVYGGQRFFERAEIKHAIAYLQLMDNLHNDSAFLRVVNFPTRGI 415 Query: 450 GPGSAQKVLEAMATHADPIAALSELPAPPRSGDDWRGFVEVLQF------------MAQG 497 G + + + +A + + A A ++G FV++++ M + Sbjct: 416 GAKAMESLQDAARQYGCSLYAAVPYVA-GKAGSSLNAFVKLIEGARFETQHLPLPEMVKV 474 Query: 498 RTGWPGEIAHARSWYAPHLERQHEDAATRQADLLQLEQIASGYPSRERFLTELTLDPP-- 555 G + H R+ ++ A R +L QL A+ + S E + LD P Sbjct: 475 VLDLSGLMTHYRN---------EKEGADRIENLEQLVSAATLFVSEEGY----GLDAPAF 521 Query: 556 ----------DATSDQSGVPLLD-------------------------------EDYLIL 574 A + GV +LD +D L L Sbjct: 522 LGPQAQATAGAAITTADGVEVLDADAPLVTIMSPLSAFLSHASLEAGDNQAQAGQDALQL 581 Query: 575 STIHSSKGQEWKSVYVLNVVDGCIPADLATGSTAEIEEERRLLYVAMTRAKDDLHLMVPQ 634 T+HS+KG E+ +V++ + +G P + + +EEERRL+YVA+TRA+ L + Q Sbjct: 582 MTVHSAKGLEFDAVFITGMEEGLFPHENSAKEEGGVEEERRLMYVAITRARKRLFMTFSQ 641 Query: 635 KFFTGGQ 641 GQ Sbjct: 642 TRMLHGQ 648 >gi|300313605|ref|YP_003777697.1| ATP-dependent DNA helicase rep [Herbaspirillum seropedicae SmR1] Length = 690 Score = 191 bits (486), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 155/452 (34%), Positives = 229/452 (50%), Gaps = 49/452 (10%) Query: 31 QQAALPAPARPLLVIAGAGSGKTNTLAHRVAHLIVN-GADPRRILLMTFSRRAAAEMTRR 89 Q A+ A P LV+AGAGSGKT + ++AHLI N G + R I +TF+ +AA EM R Sbjct: 12 QSEAVHYMAGPCLVLAGAGSGKTRVITQKIAHLIENCGYESRNIAALTFTNKAALEMQER 71 Query: 90 VQRICGEALGANGRIMADALSWAGTFHGIGAQILREYADQIGLDPNFSIHDREDSADLMN 149 + ++ + A ++ TFH +G +ILR+ + +GL FSI D +D L+ Sbjct: 72 IAKLLKDPKQAKHLTVS-------TFHSLGVKILRQESQHLGLKDRFSIMDSDDCFSLV- 123 Query: 150 LVRHELGLSKTEKRFPLKSTCLAIYSRVVNSEAPLDSILHKVFPWCAEW------EAQLR 203 EL ++ T+K AI V NS + + L V P AE EAQ Sbjct: 124 ---QELAVT-TDK---------AIIRGVQNSISLWKNGL--VDPDLAEKNARTEDEAQAA 168 Query: 204 TLFGAYVEAKQAHNVLDYDDLLLYWAQTI-GERVLADDIGARFDHVLVDEYQDTNRLQSS 262 ++ +YV +A+ +D+DDL+ + + D + ++L+DEYQDTN Q Sbjct: 169 RIYRSYVATLKAYQAVDFDDLIRLPVELFRSNEEVRDRWQRKLRYLLIDEYQDTNTCQYE 228 Query: 263 ILLALKPDGRG----LTVVGDDAQAIYSFRAATVRNI----LDFPRAFDPPADIVTLDRN 314 L+ L G G T VGDD QAIY++R AT+ N+ +DFP ++ L++N Sbjct: 229 -LVKLLVTGIGKKPMFTAVGDDDQAIYAWRGATIENLKLLGVDFPNLH-----LIKLEQN 282 Query: 315 YRSTQTILAAANSVIDKALERFTKNLWTERVSDHKPQLVSVRDEADQACYIVERVLENR- 373 YRS+ IL AAN+VI + F K LW+E ++++ DE +A I + +R Sbjct: 283 YRSSTRILQAANAVISNNPKLFDKTLWSEHGLGDPITVMAMDDEEAEADQIAITLSAHRF 342 Query: 374 EAGSTLKDQAVLFRASDHSGPLEIELVRRNIPFVKFGGLKFLDSAHIKDMLAMLRFVQNP 433 E + D A+L+R + + LE L R IP+V GG + D A IKD++A LR + N Sbjct: 343 ERRAKFADYAILYRGNHQARILEKSLRRERIPYVMSGGQSYFDRAEIKDIIAYLRLIANQ 402 Query: 434 RDRVAGFRLMQLLPGVGPGSAQKVLEAMATHA 465 D A R + P G G Q LE + T A Sbjct: 403 DDDPAFIRAVT-TPRRGVG--QATLEVLGTLA 431 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,340,488 Number of extensions: 98254 Number of successful extensions: 306 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 294 Number of HSP's successfully gapped: 4 Length of query: 756 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 664 Effective length of database: 1,184,250 Effective search space: 786342000 Effective search space used: 786342000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)