BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0097.p
         (374 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313464|ref|YP_003777556.1| beta-lactamase class C protein ...    97   2e-21

>gi|300313464|ref|YP_003777556.1| beta-lactamase class C protein
           [Herbaspirillum seropedicae SmR1]
          Length = 403

 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 128/305 (41%), Gaps = 35/305 (11%)

Query: 52  RALLIMRDCKIVFERYKDGLGRQYNHAMYSATKSISSTLVGILMSQGKIRDLDTPVAALI 111
            A ++++D KIV+ERY DG         +S  KS  S L G+ + QGKIR LD P+    
Sbjct: 101 HAFVVIQDGKIVYERYIDGYDANSRFTSFSVAKSFVSALTGVALQQGKIRSLDEPIGHY- 159

Query: 112 PQPPGLRGDAWSNA-GRVTLRNFMQMGSGFDYKHD-------PVNNPIYGARQDR-VALA 162
                L  D  + A   +T+   + M SG D   +       PV          R +A  
Sbjct: 160 -----LNSDEIAPAYAGITIGQLLDMRSGIDVDENYGGSLASPVVRMFVSTDLHRFIARR 214

Query: 163 IGQKFIAAPGTRFNYSDADALMTGTVIASLTDRSLLEFARSTLFAPLQMSNYAWWFPDQG 222
            G +F  APG+RF Y   D L+   V+A  T   L +FA+  L+ PL M   A W  D G
Sbjct: 215 SGLRF--APGSRFEYRSVDTLVLSRVLAHATGMRLSDFAQQVLWEPLGMEQDASWSVDSG 272

Query: 223 --GRLPGGWGLRLRPMDMLKIGQLYLQEGEWNGARIFDEKYPQLAW--------TPGVSN 272
             G       L     D  ++G LYL     +G R+ D++    +W          G   
Sbjct: 273 QHGVEKAFCCLNTTARDFARLGLLYL-----DGGRVGDQQVVSPSWAHEPRQPVNHGEVL 327

Query: 273 RYGLHWWI--GKVKGVPFYFASGFKGQRIYVFPSLRVVAALTSSLSGKEEAAVPLNIVTA 330
            Y   WWI  G      F  A G  GQ IYV P+ R V    S    +++  + +  + +
Sbjct: 328 DYRDGWWIPPGNADDRDFS-AIGVFGQYIYVNPATRTVIVKLSDYGVEQDEVLTMLAMRS 386

Query: 331 IIESV 335
           I   V
Sbjct: 387 ISHYV 391


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,132,634
Number of extensions: 45924
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 287
Effective length of database: 1,207,925
Effective search space: 346674475
Effective search space used: 346674475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)