BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0095.p
         (322 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310900|ref|YP_003774992.1| alkylhydroperoxidase [Herbaspir...   338   3e-94
gi|300310899|ref|YP_003774991.1| membrane associated protein [He...   131   6e-32
gi|300312926|ref|YP_003777018.1| peroxidase-like protein [Herbas...    62   5e-11

>gi|300310900|ref|YP_003774992.1| alkylhydroperoxidase
           [Herbaspirillum seropedicae SmR1]
          Length = 201

 Score =  338 bits (867), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 159/192 (82%), Positives = 174/192 (90%)

Query: 127 MSTVIKSHGFTNEVLEWQAWLDVIDIEQASEDQIKVLEESHPKAKTSDYYLFLAHQPEIL 186
           MS +IK++GFTNE LEW AWLDVI +E AS DQIKVLEESHPKAKTSDYYLFLAHQP+IL
Sbjct: 1   MSDIIKANGFTNETLEWDAWLDVIQLEAASADQIKVLEESHPKAKTSDYYLFLAHQPDIL 60

Query: 187 RQRSAAFNAIMYAPGGMSRAERELGSMVVSRINGCVYCASVHAQRFEQLAKRNDTVQQVF 246
           RQRSAAFNAIMYAPGG+ RAERELGS+VVSRINGCVYCASVHAQRFEQLAKRNDTV+QVF
Sbjct: 61  RQRSAAFNAIMYAPGGLPRAERELGSLVVSRINGCVYCASVHAQRFEQLAKRNDTVRQVF 120

Query: 247 DDPYSAGTDAREKAISQFSIDLTNNPGGVNAASIKALEDVGLTGQEILDLIHSVAIFAWA 306
           D PY AG DARE+AI++FS +LT  PG V+AA IKAL DVGL+  E+LDLIHSVAIFAWA
Sbjct: 121 DTPYGAGVDARERAIAKFSAELTETPGDVSAAQIKALYDVGLSELEVLDLIHSVAIFAWA 180

Query: 307 NRLMLNLGEPVF 318
           NRLMLNLGEPVF
Sbjct: 181 NRLMLNLGEPVF 192


>gi|300310899|ref|YP_003774991.1| membrane associated protein
          [Herbaspirillum seropedicae SmR1]
          Length = 173

 Score =  131 bits (330), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 64/82 (78%), Positives = 71/82 (86%), Gaps = 1/82 (1%)

Query: 1  MTTQVEYNIDNDVIDKLSGLQAGGALHTLRHQREKVAVASQGSYDALFDPALEGIGLDER 60
          MTT V Y+I  DVID+L+GL  G ALH+LRHQR+KVAVASQGSYD LFDPALEGIGLDER
Sbjct: 1  MTTPV-YDIHADVIDQLAGLSVGSALHSLRHQRDKVAVASQGSYDTLFDPALEGIGLDER 59

Query: 61 LLVALYACRLAGASEVAGHYRA 82
          LLVALYACRLAGA ++  HYRA
Sbjct: 60 LLVALYACRLAGADDLVAHYRA 81


>gi|300312926|ref|YP_003777018.1| peroxidase-like protein
           [Herbaspirillum seropedicae SmR1]
          Length = 177

 Score = 62.4 bits (150), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 62/136 (45%)

Query: 174 DYYLFLAHQPEILRQRSAAFNAIMYAPGGMSRAERELGSMVVSRINGCVYCASVHAQRFE 233
           + +L LAH+P+  R   A  +A+M  PG +++AERE+  +  S  N C YC   H     
Sbjct: 21  NVFLVLAHRPDEFRAFFAYHDALMDKPGRLTKAEREMIVVATSNANQCQYCVVAHGAILR 80

Query: 234 QLAKRNDTVQQVFDDPYSAGTDAREKAISQFSIDLTNNPGGVNAASIKALEDVGLTGQEI 293
             AK      QV  +   A    R+KA+  F++ ++ +   V       L   G   ++ 
Sbjct: 81  IRAKDPLLADQVAINYRKADISERQKAMLDFAMKVSASAWAVGEEDFATLRKHGWEEEDA 140

Query: 294 LDLIHSVAIFAWANRL 309
            D+    A F  +NRL
Sbjct: 141 WDMAAIAAFFGMSNRL 156


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 992,881
Number of extensions: 38550
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 3
Length of query: 322
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 237
Effective length of database: 1,217,395
Effective search space: 288522615
Effective search space used: 288522615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)