BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0094.p (769 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310897|ref|YP_003774989.1| dipeptide ABC transporter perip... 727 0.0 gi|300310898|ref|YP_003774990.1| acyl coenzyme A thioester hydro... 545 e-156 gi|300310463|ref|YP_003774555.1| dipeptide ABC transporter perip... 99 2e-21 gi|300312481|ref|YP_003776573.1| dipeptide ABC transporter perip... 95 2e-20 gi|300310860|ref|YP_003774952.1| dipeptide ABC transporter perip... 80 6e-16 >gi|300310897|ref|YP_003774989.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/381 (90%), Positives = 366/381 (96%) Query: 26 QTLNIAFADPLSSLDPQLNNHAGDRSVDLHFWDLLVENNYNKLQPGLAASWKNIDAKTWE 85 Q LNIAFADPLSSLDPQLNNHAGDRSVDLHFWDLLV+N+YNKL PGLA SWKNID KTWE Sbjct: 29 QNLNIAFADPLSSLDPQLNNHAGDRSVDLHFWDLLVQNDYNKLVPGLAVSWKNIDPKTWE 88 Query: 86 FKLRPNVKWQDGKPFTADDVIFSYQRARAVPGSVATFAGYLRTVESVTAKDPLTLIIKTN 145 FKLRPNVKWQDGKPFTADDVIFSYQRARAVPGSVATFAGYLRTVESVTAKDPLTL+IKTN Sbjct: 89 FKLRPNVKWQDGKPFTADDVIFSYQRARAVPGSVATFAGYLRTVESVTAKDPLTLVIKTN 148 Query: 146 IANPDLPLNLASVHIVSKHVGEKSQTENYNSGAAMVGSGPYKYVSYTPGDRVVMERNNDY 205 I NPDLPLNLASVHIVSKH+GEKS TENYNSGAA++G+GPYK+VSYTPGDRVVM+RN+DY Sbjct: 149 IPNPDLPLNLASVHIVSKHIGEKSTTENYNSGAAVIGTGPYKFVSYTPGDRVVMQRNDDY 208 Query: 206 WGQKQLWEKVNYRYINNAAARTAALLSGDVDVIDKVSVSDLAKLKQSPNVKVFPYNGLRV 265 W K LWEKVNYRYINN AARTAALLSGDVDVIDKVSVSDLAKLKQSPNVKV+PYNGLRV Sbjct: 209 WNGKPLWEKVNYRYINNGAARTAALLSGDVDVIDKVSVSDLAKLKQSPNVKVYPYNGLRV 268 Query: 266 LLLQPTFHEGPSPYITDNNGKQLDKNPLLDARVRKALSLAINRKALVDRILQGAATEANQ 325 LL+QP+FH+GPSP+ITDNNGKQLDKNPLLD RVR+A+SLAINRKAL+DRILQGAATEANQ Sbjct: 269 LLIQPSFHQGPSPFITDNNGKQLDKNPLLDVRVRRAMSLAINRKALIDRILQGAATEANQ 328 Query: 326 WMPADTFGYNPDIKNIPNDVNQAKKLLADAGFPQGFKLTIHVPNDRYPQAPETMQAVAQF 385 WMPADTFGYNP+IKNIP D QAKKLLADAGFP GFKLTIHVPNDRYPQAPETMQAVAQF Sbjct: 329 WMPADTFGYNPEIKNIPFDAAQAKKLLADAGFPDGFKLTIHVPNDRYPQAPETMQAVAQF 388 Query: 386 WTRIGVKTQVEVLPWASYSAR 406 WTRIG+KTQVEVLPWA+YS+R Sbjct: 389 WTRIGIKTQVEVLPWAAYSSR 409 >gi|300310898|ref|YP_003774990.1| acyl coenzyme A thioester hydrolase [Herbaspirillum seropedicae SmR1] Length = 443 Score = 545 bits (1404), Expect = e-156, Method: Compositional matrix adjust. Identities = 273/352 (77%), Positives = 293/352 (83%), Gaps = 5/352 (1%) Query: 410 PEQPGKRELFHADVQQPLTTALEATAASAPG-----NAEAELIQRLCGDGVTRQEVREQG 464 P Q G+R+ FHADV PL T L +A PG A L+QRL G GVTR+EVRE G Sbjct: 85 PVQAGRRDQFHADVMAPLETTLTVSALEQPGLPPCTPASTRLVQRLAGAGVTRREVRELG 144 Query: 465 LVGTLFLPAGPGPHPAVMILNGSGGGINEPRAALYASRGYAAFALAYFKAPGLSDYISNT 524 LVGTLFLPA PGPHPAVMILNGSGGGINEPRAALYASRGYAAFALAYFKAPGLSDYISNT Sbjct: 145 LVGTLFLPATPGPHPAVMILNGSGGGINEPRAALYASRGYAAFALAYFKAPGLSDYISNT 204 Query: 525 PLEYFEKGLDWLRATVRPLGDFVAISGQSRGGELVLLLGATFPQKVSAVLAYVPSALVHS 584 PLEYFE+GLDWLRA V PL DFVAISGQSRGGELVLLLGATFPQKVSAVLAYVPSALVHS Sbjct: 205 PLEYFERGLDWLRAEVSPLHDFVAISGQSRGGELVLLLGATFPQKVSAVLAYVPSALVHS 264 Query: 585 GQNACDPAIGREGPTWLRDGKPLTHQWENNRHASWAPFDEGAPPHRHVLAMLTALQDKEA 644 GQNA DP IGREGPTWL G+PL HQW++NR ASWAPFDEG PHRH LAMLTALQD+EA Sbjct: 265 GQNAADPTIGREGPTWLLRGQPLPHQWQDNRTASWAPFDEGPAPHRHELAMLTALQDEEA 324 Query: 645 VAKARIPVEHIDAPVLLLSATDDGSWPSSIYSKMVSDKLDEVAHPHAVEWHDYRDAGHAI 704 VA+ARIPVE I APVLLLSATDDGSWPSS+Y MV DKL EVAHP V W +Y +AGH+I Sbjct: 325 VARARIPVEKIAAPVLLLSATDDGSWPSSLYCGMVRDKLAEVAHPWPVLWRNYANAGHSI 384 Query: 705 LFPYVPTTQISYAHPVSKRLSTGGGAPAANAHADKHSWQHAQEFLRNAIGAH 756 LFP+VPTTQ +YAHPVS R+STGGG AANA AD SWQ AQ FLR+A+ H Sbjct: 385 LFPFVPTTQTTYAHPVSGRISTGGGEAAANARADLDSWQQAQHFLRDALTRH 436 >gi|300310463|ref|YP_003774555.1| dipeptide ABC transporter periplasmic peptide-binding protein [Herbaspirillum seropedicae SmR1] Length = 540 Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 91/273 (33%), Positives = 131/273 (47%), Gaps = 27/273 (9%) Query: 3 NMKKTVLS-SLLAVALLGF----GSAGAQT------LNIAF--ADPLSSLDPQLNNHAGD 49 +M +T+L+ SL+ V G GS AQT + IA + +LDP H+ D Sbjct: 32 DMMRTLLAGSLMTVGGTGLLTASGSVMAQTGKRGGKMRIATQTSSTADTLDPAKTAHSTD 91 Query: 50 RSVDLHFWDLLVENNYNKLQPG--LAASWKNIDAKTWEFKLRPNVKWQDGKPFTADDVIF 107 + F++ L + + KL P LA DA TW KLR V + DGKP T DV++ Sbjct: 92 YTRVHMFYNGLTKLD-GKLGPQMVLAEEMLTNDAVTWTVKLRKGVNFHDGKPLTPADVVY 150 Query: 108 SYQRARAVPGSVATFAGYLRTVESVTAKDPLTLIIKTNIANPDLPLNLASVHIVSKHVGE 167 S R + P + + ESV A P + IK AN DLP+ LA+ + G Sbjct: 151 SIMRHKD-PATASKVKVVADQFESVKATGPNEVQIKLTSANADLPVILATAQFLIIRDG- 208 Query: 168 KSQTENYNSGAAMVGSGPYKYVSYTPGDRVVMERNNDYW--GQKQLWEKVNYRYINNAAA 225 T N+++ G+G +K +TPG R + RN +YW G L ++V I + AA Sbjct: 209 ---TTNFSTPN---GTGAFKLKEFTPGVRTIGVRNENYWKPGLPYL-DEVELFGIPDEAA 261 Query: 226 RTAALLSGDVDVIDKVSVSDLAKLKQSPNVKVF 258 R ALLSGDV I+ V+ ++K +P V Sbjct: 262 RVNALLSGDVHWINDVNSRSTGRVKNTPGYTVM 294 >gi|300312481|ref|YP_003776573.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 512 Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 97/364 (26%), Positives = 168/364 (46%), Gaps = 47/364 (12%) Query: 57 WDLLVENN--YNKLQPGLAASWKNIDAKTWEFKLRPNVKWQDGKPFTADDVIFSYQRARA 114 WD L+ + N+ +P LA +WK LR V++Q+G F+ADDV+F++ A + Sbjct: 65 WDTLIYRDPKTNEYKPQLATAWKWESPTALVLDLRQGVQFQNGDKFSADDVVFTFNYAVS 124 Query: 115 VPGSVATF--AGYLRTVES-------VTAKDPLTLIIKTNIANPDLPLNLASVHIVSKHV 165 T ++++V+ + K P ++ +A P LP+ A+ K V Sbjct: 125 PESKAVTRQNTDWIKSVDKLADYKVRINLKGPFPAALEY-LAGP-LPIYPAAYF---KKV 179 Query: 166 GEKSQTENYNSGAAMVGSGPYKYVSYTPGDRVVMERNNDYW-----GQKQLWEKVNYRYI 220 G + ++ A +G+GPYK S TPG V + +N Y+ GQ + + + I Sbjct: 180 GLEGFSK------APIGTGPYKVTSVTPGQGVTLVKNPGYFKDSPQGQPTI-GNIKFVVI 232 Query: 221 NNAAARTAALLSGDVDVIDKVSVSDLAKLKQSPNVKVFPYNGLRVLLLQPTFHEGPSPYI 280 + R A L++G +D I +V LK +P + V +R+ + Sbjct: 233 PDPETRAAQLMTGAIDWIWRVPPDQADSLKTNPKLAVQSGETMRIGFI-----------T 281 Query: 281 TDNNGKQLDKNPLLDARVRKALSLAINRKALVDRILQGAATEANQWMPADTFGYNPDIKN 340 D G +P D RVR+A++ AINRK D +++G + FG + + Sbjct: 282 LDTTGTSAPNSPFKDVRVRQAVNHAINRKGYADNLMRGGSQPVYTACFRTQFGCDSNAA- 340 Query: 341 IPNDVN--QAKKLLADAGFPQGFKLTIHVPNDRYPQAPETMQAVAQFWTRIGVKTQVEVL 398 I D N +AK+LLA AG+P GF I+ +R E +A+ ++G++ ++ + Sbjct: 341 IKYDYNPAKAKELLAAAGYPNGFDTDIYAYRER-----EIAEAIIGDLRKVGIRARLHYM 395 Query: 399 PWAS 402 +A+ Sbjct: 396 KFAA 399 >gi|300310860|ref|YP_003774952.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 94/395 (23%), Positives = 160/395 (40%), Gaps = 48/395 (12%) Query: 23 AGAQTLNIAFADPLSSLDPQLNNHAGDRSVDLHFWDLLVENNYNKLQPGLAASWK-NIDA 81 AG L + L+ LDP + + R L LL ++ +LQP +A++W + D Sbjct: 50 AGKDMLTVVGPWELTGLDPTRSGYMFARMEVLE--TLLEVDDAGQLQPSVASAWSVSADG 107 Query: 82 KTWEFKLRPNVKWQDGKPFTADDVIFSYQRARAVPGSVATFAGYLRTVESVTAKDPLTLI 141 W F LR +++ DG T ++ QRA+A PG + VE T L ++ Sbjct: 108 LQWRFVLRSGLRYHDGSALTPASILACLQRAQARPGVLRLADIAALRVEGQT----LVVV 163 Query: 142 IKTNIANPDLPLNLASVHIVSKHVGEKSQTENYNSGAAMVGSGPYKYVSYTPGDRVVMER 201 ++ P PL H ++ + S N A++GSGP++ S + +ER Sbjct: 164 LR----RPFGPLPYLLTHYTTQILAPASFDAQGNV-VAIIGSGPFRIRSIALPQQFEVER 218 Query: 202 NNDYWGQK-------QLWEKVNYRYINNAAARTAALLSGDVDVIDKVSVSDLAKLKQSPN 254 ++ ++ Y ++ A RT + SG D+ + + L+ SP Sbjct: 219 VAGSVSGSGAGSDVGKVVQRARYISVSRAETRTLLVQSGQADLAFSLDPPSIRALQDSPR 278 Query: 255 VKVFPYNGLRVLLLQPTFHEGPSPYITDNNGKQLDKNPLLDARVRKALSLAINRKALVDR 314 + R LL+ N G L L D RVR+A+SL I R+ + Sbjct: 279 ASLLSAMLPRTTLLKL------------NAGHPL----LADVRVRRAISLCIEREGIARA 322 Query: 315 ILQGAATEANQWMPADTFGY-NPDIKNIPNDVNQAKKLLADAGFPQG-----------FK 362 +L+ A Q P + + + + ++ QA+ LL AG+ G Sbjct: 323 LLRDPDLGATQLFPPSLARWHDAALAPLRTNLQQARSLLDQAGWRPGSDGVRRRDGQRMA 382 Query: 363 LTIHVPNDRYPQAPETMQAVAQFWTRIGVKTQVEV 397 L + DR P+ P A+ + +IG+ +V + Sbjct: 383 LNLTTFVDR-PELPLIATALQEEMRQIGMAVRVVI 416 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.133 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,491,794 Number of extensions: 109108 Number of successful extensions: 323 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 313 Number of HSP's successfully gapped: 7 Length of query: 769 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 676 Effective length of database: 1,179,515 Effective search space: 797352140 Effective search space used: 797352140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)