BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0093.p (338 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter AT... 522 e-149 gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp... 237 9e-64 gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter AT... 232 4e-62 gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel A... 193 2e-50 gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel A... 191 5e-50 >gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 335 Score = 522 bits (1344), Expect = e-149, Method: Compositional matrix adjust. Identities = 256/332 (77%), Positives = 279/332 (84%), Gaps = 1/332 (0%) Query: 6 KNTVPLIDARRVVKRFGERKPRPFERQLTARGWMRPAAVTQALDGVDLHVMPGEVVGLVG 65 K +PLI+ R V +RFGER+ +RQL ARGW RP A+T ALD VDL V+PGEVVGLVG Sbjct: 3 KAVIPLIETRAVSRRFGERRQGWLQRQLQARGWSRPPAITHALDKVDLKVLPGEVVGLVG 62 Query: 66 ESGCGKSTLGRIVSGLLAPSAGSVLVDGIDRKDFSAQDAQAARRKVQMIFQNPYASLNPR 125 ESGCGKSTLGR+ GLL PS G VLV+G DR S+++ AR +VQMIFQNPYASLNPR Sbjct: 63 ESGCGKSTLGRVACGLLDPSDGQVLVNGRDRASLSSREEAEARLQVQMIFQNPYASLNPR 122 Query: 126 LRVDQIVGEAALIHGMTDKAGLDDYVSAQLLRAGLDPELRDRYPHQFSGGQRQRIGIARA 185 LR+DQIVGEAA ++G + LDDYV QLLRAGLDP LRDRYPHQFSGGQRQRIGIARA Sbjct: 123 LRIDQIVGEAAQVNGKVE-GDLDDYVCQQLLRAGLDPALRDRYPHQFSGGQRQRIGIARA 181 Query: 186 LAVQPAMLVCDEAVAALDVSIQAQILNLFSDLREQLGLTYLFISHDLGVVEHVSDRVVIM 245 LAVQP MLVCDEAVAALDVSIQAQILNLF DLR +LGLTYLFISHDLGVVEHVSDRVVIM Sbjct: 182 LAVQPQMLVCDEAVAALDVSIQAQILNLFMDLRAELGLTYLFISHDLGVVEHVSDRVVIM 241 Query: 246 YLGRIVESAAVDELFAHPNHPYTQALLAEVPRLQARNKSFTAIKGEIPSPLNPPPGCHFN 305 YLGR+VESA V ELF PNHPYTQALLAEVPR+ AR K FTAIKGEIPSPLNPP GCHFN Sbjct: 242 YLGRVVESAPVAELFGQPNHPYTQALLAEVPRMGARKKEFTAIKGEIPSPLNPPTGCHFN 301 Query: 306 PRCPHAMPRCRAEVPALKEVAPGHLSACHLND 337 PRCPHA RCR E P L+E+APGH+SACHLND Sbjct: 302 PRCPHATQRCREEQPLLREIAPGHMSACHLND 333 >gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 617 Score = 237 bits (605), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 134/290 (46%), Positives = 178/290 (61%), Gaps = 18/290 (6%) Query: 47 ALDGVDLHVMPGEVVGLVGESGCGKSTLGRIVSGLLAPSAGSVLVDGIDRKDFSAQDAQA 106 A++ V + GE + +VGESGCGKST GR + L+ + G V G D + + Sbjct: 338 AVEKVSFDLYAGETLAIVGESGCGKSTTGRSLLRLVDIAGGKVEFGGRDLAQLPRSELRQ 397 Query: 107 ARRKVQMIFQNPYASLNPRLRVDQIVGEAALIHGMTDKAGLDDYVSAQLLRAGLDPELRD 166 RR +Q IFQ+P+ASL+PR+ V + E L+HGM K G + V A L R GL PE Sbjct: 398 LRRDIQFIFQDPFASLDPRMTVGYSIMEPMLVHGM--KEGAQERVDALLTRVGLTPEHGQ 455 Query: 167 RYPHQFSGGQRQRIGIARALAVQPAMLVCDEAVAALDVSIQAQILNLFSDLREQLGLTYL 226 RYPH+FSGGQRQRI IARALA+ P +++ DE+V+ALDVSIQAQI+NL DL+ +LG++++ Sbjct: 456 RYPHEFSGGQRQRICIARALALNPKIVIADESVSALDVSIQAQIVNLMLDLQAELGISFI 515 Query: 227 FISHDLGVVEHVSDRVVIMYLGRIVESAAVDELFAHPNHPYTQALLAEVPRL--QARNKS 284 FISHD+ VVE +S RV +MYLG+IVE +F +P HPYT+ L+A VP R Sbjct: 516 FISHDMAVVERISHRVAVMYLGQIVEIGPRRAIFENPQHPYTRKLMAAVPVADPTLRQPG 575 Query: 285 FTAIKGEIPSPLNPPPGCHFNPRCPHAMPRCRAEVPALKEVAPGHLSACH 334 + EIPSP+ R P+ V L+EVAPGH A H Sbjct: 576 KKLLTDEIPSPI----------RRVGDEPK----VEPLQEVAPGHFVAQH 611 Score = 166 bits (420), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 98/245 (40%), Positives = 140/245 (57%), Gaps = 13/245 (5%) Query: 47 ALDGVDLHVMPGEVVGLVGESGCGKSTLGRIVSGLLAPSAGSVLVDGID-------RKDF 99 A+ + HV GE + +VGESG GKS + L+ G + + R D Sbjct: 26 AVRDLSFHVDQGETLAIVGESGSGKSVSSLAIMRLIEHGGGKIASGSMQFLRRSGQRLDL 85 Query: 100 SAQDAQAARR----KVQMIFQNPYASLNPRLRVDQIVGEAALIH-GMTDKAGLDDYVSA- 153 + D R ++ MIFQ P SLNP V + + E+ +H G+ A + + Sbjct: 86 AQADNATMRSIRGAEIAMIFQEPMTSLNPVFTVGEQIAESIRLHQGLGRAAAQAEALRML 145 Query: 154 QLLRAGLDPELRDRYPHQFSGGQRQRIGIARALAVQPAMLVCDEAVAALDVSIQAQILNL 213 +++R + R+PHQ SGG RQR+ IA AL+ +P++L+ DE ALDV+IQAQIL L Sbjct: 146 EMVRIPEAKRVLGRHPHQLSGGMRQRVMIAMALSCKPSLLIADEPTTALDVTIQAQILQL 205 Query: 214 FSDLREQLGLTYLFISHDLGVVEHVSDRVVIMYLGRIVESAAVDELFAHPNHPYTQALLA 273 L++++ + +FI+HD+GVV V+DRVV+M G VE AV+ LFA P HPYTQ+LLA Sbjct: 206 IRSLQQEMQMGVIFITHDMGVVAEVADRVVVMCRGEKVEENAVNPLFAAPAHPYTQSLLA 265 Query: 274 EVPRL 278 VPRL Sbjct: 266 AVPRL 270 >gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 280 Score = 232 bits (591), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 119/238 (50%), Positives = 164/238 (68%), Gaps = 3/238 (1%) Query: 36 RGWMRPAAVTQALDGVDLHVMPGEVVGLVGESGCGKSTLGRIVSGLLAPSAGSVLVDGID 95 RG +P +A++ V L + GE +GLVGESGCGKSTL +++ GLL P++G+VL++G Sbjct: 29 RGLFQPPGQLKAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLPPTSGNVLING-- 86 Query: 96 RKDFSAQDAQAARRKVQMIFQNPYASLNPRLRVDQIVGEAALIHGMTDKAGLDDYVSAQL 155 ++ + +A R +Q IFQ+PY+SLNPR V +IVG +HG+ + A + V L Sbjct: 87 -QEVDPTERKAHARHIQPIFQDPYSSLNPRKTVAEIVGLPLKLHGIGNAAERNRQVKDIL 145 Query: 156 LRAGLDPELRDRYPHQFSGGQRQRIGIARALAVQPAMLVCDEAVAALDVSIQAQILNLFS 215 G+ +YP+Q SGGQRQR+ IARAL ++P +L+CDE +ALDVS+QAQILNL Sbjct: 146 DLVGMPERTHAQYPNQLSGGQRQRVAIARALILRPDILICDEPTSALDVSVQAQILNLLL 205 Query: 216 DLREQLGLTYLFISHDLGVVEHVSDRVVIMYLGRIVESAAVDELFAHPNHPYTQALLA 273 DL+ + GLTYLFISHDLGVVEH+ DRV +M G IVE + ++LF+ P H YT+ LLA Sbjct: 206 DLKAEFGLTYLFISHDLGVVEHLVDRVAVMNQGSIVELQSREQLFSEPQHLYTRMLLA 263 >gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 334 Score = 193 bits (490), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 117/281 (41%), Positives = 157/281 (55%), Gaps = 15/281 (5%) Query: 47 ALDGVDLHVMPGEVVGLVGESGCGKSTLGRIVSGLL----APSAGSVLVDGIDRKDF-SA 101 A+ G+D V GE++ LVGESGCGKS + GLL SA +L DG+D Sbjct: 23 AVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLPRKAQCSADHILFDGVDLHGMPDK 82 Query: 102 QDAQAARRKVQMIFQNPYASLNPRLRVDQIVGEAALIHGMTDKAGLDDYVSAQLLRAGL- 160 Q Q +++ MIFQ P SLNP + + EA L +A + L R G+ Sbjct: 83 QLMQLRGKRMAMIFQEPMTSLNPSYTLGNQLCEAMLQQPGVSRAEARERALYLLHRTGIS 142 Query: 161 DPELRDR-YPHQFSGGQRQRIGIARALAVQPAMLVCDEAVAALDVSIQAQILNLFSDLRE 219 + E R R YPHQ SGG RQR+ IA +L P +++ DE ALDV+IQAQIL + +L++ Sbjct: 143 NAEDRLRQYPHQLSGGLRQRVMIAMSLMCNPDLIIADEPTTALDVTIQAQILRMIRELQQ 202 Query: 220 QLGLTYLFISHDLGVVEHVSDRVVIMYLGRIVESAAVDELFAHPNHPYTQALLAEVPRLQ 279 + G +FI+HDLGVV ++DRV +MY G++VE+ V +LFA P HPYTQ LL +P Sbjct: 203 EFGAAVIFITHDLGVVSRIADRVAVMYAGQVVETTDVAQLFAQPRHPYTQGLLNCIP--- 259 Query: 280 ARNKS-----FTAIKGEIPSPLNPPPGCHFNPRCPHAMPRC 315 R K+ AI G +PS + GC F RC A C Sbjct: 260 VRGKTLPGSHLQAIPGVVPSLVGQVSGCAFRNRCAKADSGC 300 >gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 330 Score = 191 bits (486), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 118/307 (38%), Positives = 162/307 (52%), Gaps = 14/307 (4%) Query: 38 WMRPAAVTQALDGVDLHVMPGEVVGLVGESGCGKSTLGRIVSGLL-APS---AGSVLVDG 93 + P V A+D V L V G ++GLVGESG GKS G + G++ AP G +L G Sbjct: 15 FFTPEGVLPAVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVDAPGRIVGGEILFQG 74 Query: 94 IDRKDFSAQDAQAARR----KVQMIFQNPYASLNPRLRVDQIVGEAALIHGMTDKAGLDD 149 +D D + R ++ MIFQ+P +LNP L+V+ + +A L H + + Sbjct: 75 ---RDLVRMDKTSLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAVLAHSKVSRQQARE 131 Query: 150 YVSAQLLRAGL-DPELR-DRYPHQFSGGQRQRIGIARALAVQPAMLVCDEAVAALDVSIQ 207 L G+ PE R YPHQ SGG RQR+ IA A+ +P +++ DE ALDV+IQ Sbjct: 132 LARDTLGMMGIASPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIADEPTTALDVTIQ 191 Query: 208 AQILNLFSDLREQLGLTYLFISHDLGVVEHVSDRVVIMYLGRIVESAAVDELFAHPNHPY 267 AQIL+ L Q G ++I+HDL VV ++D V +MY GRIVE +VD + P HPY Sbjct: 192 AQILSEVQKLARQHGTALIWITHDLSVVAGLADEVAVMYAGRIVEQGSVDAVLDAPLHPY 251 Query: 268 TQALLAEVPRLQARNKSFTAIKGEIPSPLNPPPGCHFNPRCPHAMPRCRAEVPALKEVAP 327 TQ L+ +P R I G P+ L+ PP C F RC +C PA+ E P Sbjct: 252 TQGLIGSLPSNNRRGARLRQIPGMTPNLLHLPPTCAFAARCERLSQQCLV-APAISEPLP 310 Query: 328 GHLSACH 334 H C+ Sbjct: 311 AHRVRCY 317 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,132,592 Number of extensions: 49979 Number of successful extensions: 543 Number of sequences better than 1.0e-08: 120 Number of HSP's gapped: 387 Number of HSP's successfully gapped: 131 Length of query: 338 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 252 Effective length of database: 1,212,660 Effective search space: 305590320 Effective search space used: 305590320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)