BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0092.p (128 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel A... 211 2e-56 gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel A... 94 3e-21 gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter AT... 84 3e-18 gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp... 60 6e-11 gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPa... 57 3e-10 >gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 330 Score = 211 bits (537), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 98/127 (77%), Positives = 111/127 (87%), Gaps = 1/127 (0%) Query: 2 NGTALIWITHDLSVVAGLADDIAVMYSGRIVEQGAVAEVLDRPQHPYTQGLIGSLPGNNR 61 +GTALIWITHDLSVVAGLAD++AVMY+GRIVEQG+V VLD P HPYTQGLIGSLP NNR Sbjct: 205 HGTALIWITHDLSVVAGLADEVAVMYAGRIVEQGSVDAVLDAPLHPYTQGLIGSLPSNNR 264 Query: 62 RGQRLRQIPGLTPNLLHLPPTCAFAARCERVSEQCLTRPEITEPLPGHFVRCFHPASQIE 121 RG RLRQIPG+TPNLLHLPPTCAFAARCER+S+QCL P I+EPLP H VRC+HP + Sbjct: 265 RGARLRQIPGMTPNLLHLPPTCAFAARCERLSQQCLVAPAISEPLPAHRVRCYHPTPSTQ 324 Query: 122 TAELQHG 128 ++E QHG Sbjct: 325 SSE-QHG 330 >gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 334 Score = 94.0 bits (232), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 51/131 (38%), Positives = 75/131 (57%), Gaps = 11/131 (8%) Query: 3 GTALIWITHDLSVVAGLADDIAVMYSGRIVEQGAVAEVLDRPQHPYTQGLIGSLP--GNN 60 G A+I+ITHDL VV+ +AD +AVMY+G++VE VA++ +P+HPYTQGL+ +P G Sbjct: 205 GAAVIFITHDLGVVSRIADRVAVMYAGQVVETTDVAQLFAQPRHPYTQGLLNCIPVRGKT 264 Query: 61 RRGQRLRQIPGLTPNLLHLPPTCAFAARCERVSEQCLTRPE------ITEPLPGHFVRCF 114 G L+ IPG+ P+L+ CAF RC + C P+ +T P H RC Sbjct: 265 LPGSHLQAIPGVVPSLVGQVSGCAFRNRCAKADSGCERDPQMVQQGSVTAP---HQARCL 321 Query: 115 HPASQIETAEL 125 ++ E+ Sbjct: 322 KLDVAMDAMEV 332 >gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 335 Score = 84.3 bits (207), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 1/112 (0%) Query: 3 GTALIWITHDLSVVAGLADDIAVMYSGRIVEQGAVAEVLDRPQHPYTQGLIGSLPGNNRR 62 G ++I+HDL VV ++D + +MY GR+VE VAE+ +P HPYTQ L+ +P R Sbjct: 218 GLTYLFISHDLGVVEHVSDRVVIMYLGRVVESAPVAELFGQPNHPYTQALLAEVPRMGAR 277 Query: 63 GQRLRQIPGLTPNLLHLPPTCAFAARCERVSEQCL-TRPEITEPLPGHFVRC 113 + I G P+ L+ P C F RC +++C +P + E PGH C Sbjct: 278 KKEFTAIKGEIPSPLNPPTGCHFNPRCPHATQRCREEQPLLREIAPGHMSAC 329 >gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 617 Score = 60.1 bits (144), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 11/109 (10%) Query: 3 GTALIWITHDLSVVAGLADDIAVMYSGRIVEQGAVAEVLDRPQHPYTQGLIGSLPGNNRR 62 G + I+I+HD++VV ++ +AVMY G+IVE G + + PQHPYT+ L+ ++P + Sbjct: 511 GISFIFISHDMAVVERISHRVAVMYLGQIVEIGPRRAIFENPQHPYTRKLMAAVPVAD-- 568 Query: 63 GQRLRQIPGLTPNLLHLPPTCAFAARCERVSEQCLTRPEITEPLPGHFV 111 LRQ PG LL T + RV ++ P + E PGHFV Sbjct: 569 -PTLRQ-PG--KKLL----TDEIPSPIRRVGDEPKVEP-LQEVAPGHFV 608 Score = 54.3 bits (129), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 25/52 (48%), Positives = 35/52 (67%) Query: 6 LIWITHDLSVVAGLADDIAVMYSGRIVEQGAVAEVLDRPQHPYTQGLIGSLP 57 +I+ITHD+ VVA +AD + VM G VE+ AV + P HPYTQ L+ ++P Sbjct: 217 VIFITHDMGVVAEVADRVVVMCRGEKVEENAVNPLFAAPAHPYTQSLLAAVP 268 >gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPase [Herbaspirillum seropedicae SmR1] Length = 529 Score = 57.4 bits (137), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 25/52 (48%), Positives = 37/52 (71%) Query: 2 NGTALIWITHDLSVVAGLADDIAVMYSGRIVEQGAVAEVLDRPQHPYTQGLI 53 +G A ++ITHDL+VV +A + VM G++VE GA A+VL +PQ YT+ L+ Sbjct: 468 HGLAYLFITHDLAVVQAMAHQVIVMKDGKVVESGATAQVLQQPQQEYTRRLV 519 Score = 56.2 bits (134), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 37/56 (66%) Query: 5 ALIWITHDLSVVAGLADDIAVMYSGRIVEQGAVAEVLDRPQHPYTQGLIGSLPGNN 60 A++ I+HDL++V AD + VM G++VE +VAE+ PQ PYT+ L+ S P N Sbjct: 202 AVLIISHDLNLVRHFADRVGVMEKGKLVESASVAELFANPQQPYTRKLLQSRPQRN 257 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.138 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 456,596 Number of extensions: 18218 Number of successful extensions: 127 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 126 Number of HSP's successfully gapped: 8 Length of query: 128 Length of database: 1,619,870 Length adjustment: 75 Effective length of query: 53 Effective length of database: 1,264,745 Effective search space: 67031485 Effective search space used: 67031485 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 125 (52.8 bits)